BO30190.complete Sequence
1381 bp assembled on 2011-09-12
GenBank Submission: KX800093
> BO30190.complete
GAAGTTATCAGTCGACATGAGAACGGAGGCAGCGGTCAGTTGTTTCCTGT
TGGTATTGCACAGGGTATGCTGTCAGAGCGGCAACGATGAGTCCTGGCTG
AGTCCGGATCCCGCCTGGTCGGACCTGGTTAACGATATCAATCAGCCCGG
TGAATTGTGCCAGTGTCCTACGTGTCCAGATGTGTCTCCAGTGGCCATGG
AGGATGCCGTGGCACTCACATACTTCAAGAAGTTCGTCAATCTGCTGTTC
CAGCGCAAGCGTTTTCAGTACGATGTTATGTCGGCGGTCCATAAGCGATC
GCTGCTCTTCTCCCTGATCCCATCGCAACTGGATGAACTGGAGAGGGTGC
AGGATGCTCGGGATTTGGACGTTTTGCTGACTAAGATATTGGAGAGTGCC
GAGGAGGCTCCTTTGTTTAATGGAAGATCCGGATGCTCATACGTCCGACA
CGGCTTTTTCTCCTTATTGGTGGATATTTTCAAGGATGTAATTGAACTGA
CGCAAACGACCGAGGTGAAATTTATCCTATATGCAACATTAGCAATTGCA
CTTGTCGTCATTGTGCACAAACGTTTCCGTGTCGGACTAATTTCAATTGT
ACTAGGAGGCGTGTTTCTGTGCGGATATATTCAGACTTATTTAGAATGCA
ACAGAGAATTAGACATCGATAGGATGATAGAGGTCGTAAATCATCACCAT
GAGCCTGAATCGTCCTGGTTTGGTCGACTGTTAGGCTACATATACCAAGC
CTCACCAAAAACTAAGAAGATAGAAATGATCAAAAAATCCGCAAAAATCA
GCATTTCCATTTGCATGCCAGATCAAGTGTTCTTTATGTACATGAATAAC
ATATTTATCAAGCAGTTGGAAATCATGATAGAAAAGGTGTCGGTAACTAT
GACTAAACTGTCCTCCGGATTATCCTTCCCGTATAACCTCCTTGCACCAG
TCCTTTTGGTGTTTTTAGTGGGTTACACCATAAAGCTGTGCTTTAAATAC
ATTTTAAGCCCCCGAGCATGGGCGTCACTTTTACACAAGCCAGCGCCACA
AGGGACACCAACGATTCACCAGTCCATTAATGCACGGGCGCCCGAAGGCG
ACTCCATATCGGGCGACAACTTAAAGATGCTGCTAAATGTAATTAACGTG
AGAAATGTTCCAAAGGAGTCGCTACAGCGAATTCCAGACGTTTCGGGCGT
CCAAGAGCTAGAGGAAAAGCAGGAAGCTCCCACCACACCATCGAAAAAAG
AAAATTTAGATGAAAGCGATTCCAGCAGCAAAAGCAAGAGCAAAAGCTGT
GTAGCTGAAGATGAAGGATTCACGCTGGTCGACGATCACGAGGATAATAA
CATTGATAATGTGGCAAGCTTTCTAGACCAT
BO30190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12945-RB | 1350 | CG12945-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
| CG12945-RC | 1323 | CG12945-PC | 251..1320 | 294..1363 | 5350 | 100 | Plus |
| CG12945-RC | 1323 | CG12945-PC | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12945-RB | 2059 | CG12945-RB | 132..1478 | 17..1363 | 6735 | 100 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 382..1451 | 294..1363 | 5350 | 100 | Plus |
| CG12945-RC | 2032 | CG12945-RC | 132..383 | 17..268 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9789433..9789881 | 1363..915 | 2245 | 100 | Minus |
| 3R | 32079331 | 3R | 9790839..9791090 | 268..17 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 9790524..9790773 | 516..267 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 9790319..9790462 | 656..513 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 9789954..9790088 | 914..780 | 660 | 99.3 | Minus |
| 3R | 32079331 | 3R | 9790138..9790265 | 783..656 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:10:50 has no hits.
BO30190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:38 Download gff for
BO30190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 128..1474 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:51 Download gff for
BO30190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 132..1478 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:00 Download gff for
BO30190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12945-RB | 132..1478 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:00 Download gff for
BO30190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9790839..9791090 | 17..268 | 100 | | Minus |
| 3R | 9789429..9789881 | 915..1365 | 99 | <- | Minus |
| 3R | 9789954..9790084 | 784..914 | 100 | <- | Minus |
| 3R | 9790138..9790265 | 656..783 | 100 | <- | Minus |
| 3R | 9790320..9790460 | 515..655 | 100 | <- | Minus |
| 3R | 9790526..9790771 | 269..514 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:51 Download gff for
BO30190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5615151..5615603 | 915..1365 | 99 | <- | Minus |
| arm_3R | 5615676..5615806 | 784..914 | 100 | <- | Minus |
| arm_3R | 5615860..5615987 | 656..783 | 100 | <- | Minus |
| arm_3R | 5616042..5616182 | 515..655 | 100 | <- | Minus |
| arm_3R | 5616248..5616493 | 269..514 | 100 | <- | Minus |
| arm_3R | 5616561..5616812 | 17..268 | 100 | | Minus |
BO30190.pep Sequence
Translation from 16 to 1381
> BO30190.pep
MRTEAAVSCFLLVLHRVCCQSGNDESWLSPDPAWSDLVNDINQPGELCQC
PTCPDVSPVAMEDAVALTYFKKFVNLLFQRKRFQYDVMSAVHKRSLLFSL
IPSQLDELERVQDARDLDVLLTKILESAEEAPLFNGRSGCSYVRHGFFSL
LVDIFKDVIELTQTTEVKFILYATLAIALVVIVHKRFRVGLISIVLGGVF
LCGYIQTYLECNRELDIDRMIEVVNHHHEPESSWFGRLLGYIYQASPKTK
KIEMIKKSAKISISICMPDQVFFMYMNNIFIKQLEIMIEKVSVTMTKLSS
GLSFPYNLLAPVLLVFLVGYTIKLCFKYILSPRAWASLLHKPAPQGTPTI
HQSINARAPEGDSISGDNLKMLLNVINVRNVPKESLQRIPDVSGVQELEE
KQEAPTTPSKKENLDESDSSSKSKSKSCVAEDEGFTLVDDHEDNNIDNVA
SFLDH
BO30190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12945-PB | 449 | CG12945-PB | 1..449 | 1..449 | 2316 | 100 | Plus |
| CG12945-PC | 440 | CG12945-PC | 1..440 | 1..449 | 2249 | 98 | Plus |
