BO30196.complete Sequence
325 bp assembled on 2011-09-12
GenBank Submission: KX795984
> BO30196.complete
GAAGTTATCAGTCGACATGGCCGCCCCAGCACCAGCACTCAAGGATCTGC
CCAAGGTGGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGAC
AAACTGAAGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGA
AGATGTGGCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCG
CTTTCAATCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCG
TTGCCCGATAAGGAAGGAGAAGGAGAAGAATCAGTTCATCGCCGGCATCG
AGAACTTGCAAGCTTTCTAGACCAT
BO30196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RC | 294 | CG4944-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
cib-RE | 390 | CG4944-PE | 1..302 | 17..307 | 1310 | 96.4 | Plus |
cib-RD | 390 | CG4944-PD | 1..302 | 17..307 | 1310 | 96.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-RC | 885 | CG4944-RC | 162..452 | 17..307 | 1455 | 100 | Plus |
cib-RE | 911 | CG4944-RE | 177..478 | 17..307 | 1310 | 96.4 | Plus |
cib-RD | 1502 | CG4944-RD | 423..724 | 17..307 | 1310 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4109689..4109824 | 17..152 | 680 | 100 | Plus |
X | 23542271 | X | 4109895..4110011 | 151..267 | 585 | 100 | Plus |
X | 23542271 | X | 4110161..4110203 | 265..307 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:11:51 has no hits.
BO30196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:40 Download gff for
BO30196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 160..450 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:26 Download gff for
BO30196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 162..452 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:29 Download gff for
BO30196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cib-RC | 162..452 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:29 Download gff for
BO30196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4109689..4109824 | 17..152 | 100 | -> | Plus |
X | 4109897..4110010 | 153..266 | 100 | -> | Plus |
X | 4110163..4110203 | 267..309 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:26 Download gff for
BO30196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4003722..4003857 | 17..152 | 100 | -> | Plus |
arm_X | 4003930..4004043 | 153..266 | 100 | -> | Plus |
arm_X | 4004196..4004236 | 267..309 | 95 | | Plus |
BO30196.pep Sequence
Translation from 16 to 325
> BO30196.pep
MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE
KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEGEGEESVHRRHRELASF
LDH
BO30196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cib-PC | 97 | CG4944-PC | 1..97 | 1..97 | 495 | 100 | Plus |
cib-PE | 129 | CG4944-PE | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PD | 129 | CG4944-PD | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PB | 129 | CG4944-PB | 1..88 | 1..88 | 422 | 95.5 | Plus |
cib-PA | 129 | CG4944-PA | 1..88 | 1..88 | 422 | 95.5 | Plus |