BO30203.complete Sequence
3166 bp assembled on 2011-10-14
GenBank Submission: KX794314
> BO30203.complete
GAAGTTATCAGTCGACATGCCTTACCCTTTATATCCCGCCCATAGCCAAG
TAATGTCGGAAACGTCAAGCGTCAACGTGGATGCGGACCGAGATTGCAGA
AGGATTGAGGGCCTCCGACAGCGCTCACAACGCCTTGCTGCCCGCCTCCA
GCAGATGCAGAGGGAAATGGAGTCTAATGCATCCAGCAAAGACCTATCGG
CCAACAATGCCGTTATTCCGCTGCAGCCACTAATGCGCTGGGCGGAACCA
CGGCCACATCCCAACCAATCCCAACCATCTGCTCGGAGCAACAGCAGGCA
GGCCATTCCTTACGGTGTGCCAGTATCCACGCCAGCGCCGGTAGCTATGC
AATTGCCCTACCACGTAGCATTCGCCTCCTACCAGGCGACCATGCAGATT
CCCTGCCTTCAGCCACTTTCGCATTTGCACGTCGTGTCTAGTCCCAGCCA
TCGGTTAATAGCGAAAAAGAAGTCGAAGCGGGCTCTTCGAAATGAGGTGG
AAGCTCTTCAGGATATGGTCAAACATCTTTCACACCTCTCCCCAGATGTT
AACGCGTATGCCTGCCAGCTGATACGTAAAAACGAGATCCTTTCTCAGCT
CGAGTGGAGTCAGACCAGGTCAGAAGCACATCCGCAACAGGTTGGTTACC
AGGGGCGGCATCGCCACGATTCTGAGGTCTCTGCTACAAACAATGGAAGT
CATGTACAGCAGCAACCGAAACTAGGACGAAGGCAACGCAATAGCAAGAA
AAACGATGGATCCGGTAGCAATGGGACCCAATCGCAAAAAACCGAACTAG
AGGCCATGCGGTCGTACATAAACAAGATTGTCCAACGTCACGTGGGTATG
GATCACCAGTTGTCGGAAGACTTGATTTTCAAAGGTAACTTCTCCGACCT
GGAAGCGCATGCGCAGAGACTAGTTGCGGCGGGTTATGGGCGCATTGTAG
AAGAGGAAATCCGGGTTAACCGCAAGAACAACAGACAGGCCTTTATAATC
ATGTCCACTGATCGAGAAGCACTCGAACGAGATGGCATCGTGCTCTTGCC
AGTGGCTAGGCGCTATGCCTTCGATGGTGACAAAGTACGTGCATTCGTGC
TAAACCCTGGTGCTCAGGGTAGTTCAAAGACAGCTGAGCCCTCGTCTGGT
GAAATCTCTGGTGGGAAGCCCTCATTATCTCTTGCGGATGGTGAGGAGCT
TTCGGACGATACCGAGTCCCAGGGCTCTGAGTCCGATACCGACAACGTGG
TCGTGATATCGTCGGACAACTGCCCTAAAGCGTTCGTCATAGCAATAACT
AAACGAACTGAGCTCCGCCAGATCGTGGGAACCATATCGTTTACGAACCC
AACCAAACTCTGTGACGACCAGCTATTCTACAAATTCCGACCGTACGATT
TGCGTGTCCCCATGGTCTACGTTCCGAAGGATGCCTGTGCCGCCCACATC
GGAAACAAGCAGCAAATAGACGTGTCCGGCCTCTTATACCTTGCCCATAT
ACTCGAGACAGATTGCAATGGGCACTGCATCGCTGAACTAATCCAGCCGG
TTGGCCGCGTGGGTAATTTGGATGACGAACTTAAGGCAATTCTGTTTCAT
AACGGTCTCCGGGATATAAAGCCATTTGAGCAACGATTTATCGACATTTA
CTCCCAGCCGCCACCTCCGATAAGCCAAGAGGATCTGCGTCAACGAAAAG
ACTTAAGAAAGATGTGCATATTTACTATAGATCCGATGACTGCTCGCGAT
TTGGATGACGCCGTTTCTATAGAGAAGCTAGGCGACAACGAATATGAGAT
TGGCGTCCATATATCCGATGTTTCGCACTTCCTGATAGAGGACAATGAAC
TGGATAACATAGTGAAGGAACGCTCTACGTCTATTTATTTAGCCAACGAG
GTAATCCACATGCTGCCTCAGTCTCTATGCATGCGATGTTCCCTGCTCCC
TGGGCAAGACAAGTTTGCTTTTTCCGTCTTCTGGCGGATGAACGGGAAGG
GAGTCATGCTGCAAAAGAAGCCAGAATTTTGCCGCACAGTCATTAACTCT
TGCTCGCAATTTGCTTATGAACACGCTCAAAAGATCATCGACAACCCTAA
TGAACGGTTTACCGAGAACGACTTTCCGACCATCCTGAATGGATTTAATC
CCGATGATATCAGAAATAGGGTGCTATGGCTGCACGACATTGCAAGCTCC
ATCCGTAAGACACGTTTAGACAATGGCGCACTCACAATTAACAATGCCAA
GCTACGCTTCCTGCTCGATCCAATTACTGGCGAGCCGTTGTCTTTTGAAG
TGGAGAAACAGCGAGAGGCTAACCGGCTGATTGAAGAGTTTATGCTCCTG
GCCAACCAGGCAGTCGCCCGCTTTATACACGACTCCTTTCCGGATATCGC
TGTACTGCGTAACCACCCTCCGCCACTTATTAAGTCCCTTAAGGCTTTAA
GGGAAAAGCTGCTTGCTCTGGGATTCGAATTGGACTATAGCTCGTCTAAG
GCGCTCCAGGAGAGCATGGTGCGGTTGTGCAATGAGGCGCCCAATCCTGT
CGCAATGAATGCCTGCCTAAGTCAGCTTTTGATGAAACCAATGGCCCGTG
CAACATATTTTTGTAGCGAGGGTAAATCGGAACCGGCTGACCTGTGGCAC
TACGCCTTGTCCATACCCATATACACTCACTTTACTAGCCCAATCCGTCG
GTATCCTGATATTTTGGTGCACCGACTTTTGGCGGCCGCACTTAAATATT
GTACACCGCCTAAACGTACCCCAGATGATTTGCACACCTTAACGAAATTA
GCGAATGAGCGCAAGTACAATGCGAAAAAGGCCGGAGAGGACTCTGGTAA
CTTGTACTTCAAACGATATGTTCACAACAAGCAGGGCATATACATGCGAG
CTGTGGTCATTGAAATATTTCAGCATATGATGAACGTAGTTACTCTGGAG
TCGGGCCACGTTATAAGCATTAACTACAAAATGCAAAAGGTCCTCGTAGA
CACACACGGCGTACCCAATTACATTCTTATTGCCGAGCGCAACTTAAAGC
AGTCACCTAGGAAGTTGCAGCTGCTTTCCGTGGTCCCCATATGTCTGATC
ATTTGGGACCAAAAACTAACTGGATTTTTAAAGATGGAAGAACAAATTGC
AAGCTTTCTAGACCAT
BO30203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-RC | 3135 | CG16940-PC | 1..3132 | 17..3148 | 15660 | 100 | Plus |
| CG16940-RA | 3099 | CG16940-PA | 1..3096 | 53..3148 | 15480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-RC | 3546 | CG16940-RC | 42..3173 | 17..3148 | 15660 | 100 | Plus |
| CG16940-RA | 3605 | CG16940-RA | 136..3232 | 52..3148 | 15485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 214031..215451 | 1184..2604 | 7105 | 100 | Plus |
| 3L | 28110227 | 3L | 212844..213976 | 52..1184 | 5665 | 100 | Plus |
| 3L | 28110227 | 3L | 215682..216106 | 2724..3148 | 2125 | 100 | Plus |
| 3L | 28110227 | 3L | 215505..215624 | 2605..2724 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:39:39 has no hits.
BO30203.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:01 Download gff for
BO30203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..3173 | 17..3150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:52 Download gff for
BO30203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..3173 | 17..3150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:54 Download gff for
BO30203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 42..3173 | 17..3150 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:54 Download gff for
BO30203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 215505..215624 | 2605..2724 | 100 | -> | Plus |
| 3L | 212750..212784 | 17..51 | 100 | -> | Plus |
| 3L | 212844..213976 | 52..1184 | 100 | -> | Plus |
| 3L | 214032..215451 | 1185..2604 | 100 | -> | Plus |
| 3L | 215683..216106 | 2725..3150 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:52 Download gff for
BO30203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 212750..212784 | 17..51 | 100 | -> | Plus |
| arm_3L | 212844..213976 | 52..1184 | 100 | -> | Plus |
| arm_3L | 214032..215451 | 1185..2604 | 100 | -> | Plus |
| arm_3L | 215505..215624 | 2605..2724 | 100 | -> | Plus |
| arm_3L | 215683..216106 | 2725..3150 | 99 | | Plus |
BO30203.pep Sequence
Translation from 16 to 3166
> BO30203.pep
MPYPLYPAHSQVMSETSSVNVDADRDCRRIEGLRQRSQRLAARLQQMQRE
MESNASSKDLSANNAVIPLQPLMRWAEPRPHPNQSQPSARSNSRQAIPYG
VPVSTPAPVAMQLPYHVAFASYQATMQIPCLQPLSHLHVVSSPSHRLIAK
KKSKRALRNEVEALQDMVKHLSHLSPDVNAYACQLIRKNEILSQLEWSQT
RSEAHPQQVGYQGRHRHDSEVSATNNGSHVQQQPKLGRRQRNSKKNDGSG
SNGTQSQKTELEAMRSYINKIVQRHVGMDHQLSEDLIFKGNFSDLEAHAQ
RLVAAGYGRIVEEEIRVNRKNNRQAFIIMSTDREALERDGIVLLPVARRY
AFDGDKVRAFVLNPGAQGSSKTAEPSSGEISGGKPSLSLADGEELSDDTE
SQGSESDTDNVVVISSDNCPKAFVIAITKRTELRQIVGTISFTNPTKLCD
DQLFYKFRPYDLRVPMVYVPKDACAAHIGNKQQIDVSGLLYLAHILETDC
NGHCIAELIQPVGRVGNLDDELKAILFHNGLRDIKPFEQRFIDIYSQPPP
PISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHIS
DVSHFLIEDNELDNIVKERSTSIYLANEVIHMLPQSLCMRCSLLPGQDKF
AFSVFWRMNGKGVMLQKKPEFCRTVINSCSQFAYEHAQKIIDNPNERFTE
NDFPTILNGFNPDDIRNRVLWLHDIASSIRKTRLDNGALTINNAKLRFLL
DPITGEPLSFEVEKQREANRLIEEFMLLANQAVARFIHDSFPDIAVLRNH
PPPLIKSLKALREKLLALGFELDYSSSKALQESMVRLCNEAPNPVAMNAC
LSQLLMKPMARATYFCSEGKSEPADLWHYALSIPIYTHFTSPIRRYPDIL
VHRLLAAALKYCTPPKRTPDDLHTLTKLANERKYNAKKAGEDSGNLYFKR
YVHNKQGIYMRAVVIEIFQHMMNVVTLESGHVISINYKMQKVLVDTHGVP
NYILIAERNLKQSPRKLQLLSVVPICLIIWDQKLTGFLKMEEQIASFLDH
BO30203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-PC | 1044 | CG16940-PC | 1..1044 | 1..1044 | 5417 | 100 | Plus |
| CG16940-PA | 1032 | CG16940-PA | 1..1032 | 13..1044 | 5348 | 100 | Plus |
| Dis3-PB | 982 | CG6413-PB | 258..804 | 322..909 | 660 | 31.6 | Plus |
| Dis3-PA | 982 | CG6413-PA | 258..804 | 322..909 | 660 | 31.6 | Plus |
