BO30218.complete Sequence
1108 bp assembled on 2011-09-12
GenBank Submission: KX800014
> BO30218.complete
GAAGTTATCAGTCGACATGTCCATTGCAAACGTTTCCACGCACTACATAT
CCGAGAAGGTGTCCCAAGTGCGCTGGCTTCCGGAGGAACTGCAGCAGAGC
GAACGGTTCGTTACTGGAAGCTGGGACATGGACCAGAACTTCGTGCGCCT
CTGGCGGCTACAATCGAACCAATATGTCACCGCCACGGATTCGGAAGTGG
ACCAGATACCTCGCTGCATGGACAAGGTGAGAATGGAGGACGATGTGACC
GCCATGGAGTTCGTCGACAAGGACACGCTGGCTGTGAGCTGTGCCGATGG
TCATCTCAGCGTGTTTAACGTCCATCGAGCCGTGGAGGAGGATCAGATGC
AACGTACGTCCCGATCGGGACGTCTGCACTGCTTCCAACGTAGCCAGGAG
CCCGCTCCTTGCACCGACCTTTCTGTTTACGGCACGGATATCGCCACCGC
CGGCGAGGATGGGTGTGTAAGCATCGTCTCCGTGGAAAATGTGCGCCAGG
TGAAGCGACAGATTGAGGCGGACAGCATGGCGCTGTTTTCCATTTGCTAT
ATCAGCCAGCAGGAACTGGTGACTGCCAATAGGATGGGTGTTATCCGAAT
GCTGGACGCCCGAGTGGCCACTGAAGCGCAGCCGAAGACCACCTTTATGG
TGGCCTCCCAGGATGACAAGTCGAACTTTGTCTCGTCCCTTGCCAAGCAT
CCGATGCAGCAACATATTTTACTTTGCGGCAGCGAAGAGGGTTCCATAAC
CGTCTGGGATATGCGAAACCTCAGTTATCCCGCCTCCTATCTCAGCGCTC
ACAAAAGTCCCATCAACGAGATAGGCTTCCATCAAAAGGATCCCAGCAAA
CTGTTCACCGCCGCAGAAGGTGGCGAGGTGTGGATGTGGTCAGAGAACAA
AGTTCTCGGGTGCGACTATAACAAAGACGGACACAGCCCCTGGTTGTCTG
GCGATCGTGTTCGCTCCCTGGTCGATGTGGAGGGAGTGCTGAGTAATGTT
CGCAAGTCCATCAACTCCTTCGATGTGCATGGAAGTCGTCTGGTCTGCGG
AGGCGACACAGAAGCCGTTTACCTAGTTGATAATATTGTTGCAAGCTTTC
TAGACCAT
BO30218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup43-RA | 1077 | CG7671-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup43-RA | 1211 | CG7671-RA | 83..1156 | 17..1090 | 5370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18367067..18367858 | 299..1090 | 3960 | 100 | Plus |
3R | 32079331 | 3R | 18366720..18367006 | 17..303 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:38:50 has no hits.
BO30218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:52:59 Download gff for
BO30218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7671-RA | 65..1138 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:35 Download gff for
BO30218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup43-RA | 83..1156 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:38 Download gff for
BO30218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup43-RA | 83..1156 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:38 Download gff for
BO30218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18366720..18367002 | 17..299 | 100 | -> | Plus |
3R | 18367068..18367858 | 300..1092 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:35 Download gff for
BO30218.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14192442..14192724 | 17..299 | 100 | -> | Plus |
arm_3R | 14192790..14193580 | 300..1092 | 99 | | Plus |
BO30218.pep Sequence
Translation from 16 to 1108
> BO30218.pep
MSIANVSTHYISEKVSQVRWLPEELQQSERFVTGSWDMDQNFVRLWRLQS
NQYVTATDSEVDQIPRCMDKVRMEDDVTAMEFVDKDTLAVSCADGHLSVF
NVHRAVEEDQMQRTSRSGRLHCFQRSQEPAPCTDLSVYGTDIATAGEDGC
VSIVSVENVRQVKRQIEADSMALFSICYISQQELVTANRMGVIRMLDARV
ATEAQPKTTFMVASQDDKSNFVSSLAKHPMQQHILLCGSEEGSITVWDMR
NLSYPASYLSAHKSPINEIGFHQKDPSKLFTAAEGGEVWMWSENKVLGCD
YNKDGHSPWLSGDRVRSLVDVEGVLSNVRKSINSFDVHGSRLVCGGDTEA
VYLVDNIVASFLDH
BO30218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup43-PA | 358 | CG7671-PA | 1..358 | 1..358 | 1869 | 100 | Plus |