BO30293.complete Sequence
844 bp assembled on 2012-04-24
GenBank Submission: KX798488
> BO30293.complete
GAAGTTATCAGTCGACATGTCCATACAATTAGCGCCACTGCATATACCCG
CCATCCGGGCCGGTCCGGGATTCGAGACGGACACCTCGGCGGCGGTCAAG
CGGCACACGGCACACTGGGCCTACAACGACGAGGGATTCAATCAGCATTA
CGGCTCCGGGTACTACGACCGCAAGCACATGTTCGCCTATCCTTACCCAG
AAACGCAGTTTCCGGTTGGTCAGTACTGGGGCCCCAACTACCGCCCCGAT
CAGACCACCTCTGCCGCAGCGGCGGCGGCCTACATGAACGAAGCGGAGCG
CCACGTGAGCGCCGCCGCCCGACAGTCCGTCGAGGGCACATCGACGTCCA
GCTATGAGCCGCCCACCTACTCCTCGCCAGGCGGCCTGCGCGGCTATCCC
AGCGAGAACTACTCCAGCTCAGGAGCCTCTGGTGGATTATCCGTGGGAGC
AGTGGGTCCTTGCACGCCCAATCCCGGACTGCACGAGTGGACCGGTCAGG
TGTCCGTCCGGAAAAAGCGCAAGCCGTACTCGAAGTTCCAGACCCTGGAG
CTGGAGAAGGAGTTTCTTTTCAATGCGTATGTTTCCAAGCAAAAGCGCTG
GGAATTGGCCAGAAATTTGCAGCTGACCGAGCGACAGGTCAAGATATGGT
TCCAGAATCGGCGCATGAAGAACAAGAAGAACTCACAGCGCCAGGCCAAT
CAGCAGAACAACAACAACAATTCGAGCAGCAACCACAACCACGCGCAGGC
GACCCAGCAGCACCACAGCGGCCACCACCTGAACCTTAGCCTGAACATGG
GTCACCATGCCGCCAAGATGCACCAGGCAAGCTTTCTAGACCAT
BO30293.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-RG | 861 | CG11648-PG | 1..810 | 17..826 | 4050 | 100 | Plus |
| Abd-B-RF | 861 | CG11648-PF | 1..810 | 17..826 | 4050 | 100 | Plus |
| Abd-B-RE | 813 | CG11648-PE | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-RG | 2537 | CG11648-RG | 9..818 | 17..826 | 4050 | 100 | Plus |
| Abd-B-RF | 2537 | CG11648-RF | 9..818 | 17..826 | 4050 | 100 | Plus |
| Abd-B-RE | 3703 | CG11648-RE | 712..1521 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16929636..16929856 | 639..419 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 16931402..16931605 | 220..17 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 16931115..16931317 | 423..221 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 16929392..16929583 | 826..635 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2547 | 653..839 | 169 | 59.6 | Plus |
BO30293.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:30 Download gff for
BO30293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RD | 722..1531 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:49 Download gff for
BO30293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RB | 2215..3024 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:04 Download gff for
BO30293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RE | 712..1521 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:04 Download gff for
BO30293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16929388..16929580 | 638..828 | 98 | <- | Minus |
| 3R | 16929638..16929852 | 423..637 | 100 | <- | Minus |
| 3R | 16931116..16931317 | 221..422 | 100 | <- | Minus |
| 3R | 16931402..16931605 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:49 Download gff for
BO30293.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12755360..12755574 | 423..637 | 100 | <- | Minus |
| arm_3R | 12756838..12757039 | 221..422 | 100 | <- | Minus |
| arm_3R | 12757124..12757327 | 17..220 | 100 | | Minus |
| arm_3R | 12755110..12755302 | 638..828 | 98 | <- | Minus |
BO30293.pep Sequence
Translation from 16 to 844
> BO30293.pep
MSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYY
DRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAA
ARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCT
PNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARN
LQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHNHAQATQQHH
SGHHLNLSLNMGHHAAKMHQASFLDH
BO30293.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-PE | 270 | CG11648-PE | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PD | 270 | CG11648-PD | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PA | 270 | CG11648-PA | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PC | 270 | CG11648-PC | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PG | 286 | CG11648-PG | 1..270 | 1..270 | 1466 | 100 | Plus |
