BO30309.complete Sequence
535 bp assembled on 2011-09-22
GenBank Submission: KX793777
> BO30309.complete
GAAGTTATCAGTCGACATGACAACGAATTCAGTAACTGATAAGAACACGG
AAGGAGATTACAACCTGGATGAGGAAATCGACAGCCATTTGAGAAAATTG
TTCTGTCTAAAACCAAAAGCTGAAACACCCAAACTCAATCCCTACATAGT
AGAATTCTTTGGAGTTCTTAGCTTGACAGATCTCCGTGCCCCACAAAGAA
AACTATGGGTCATATATCACGCCAAGCAGCCTGATCTGGACAAGACCGTT
GATGAGATCCACGAGAAGTATGGCAAGAAGAATATGTTTGATCTGTACCG
CACACCAGTTTTCAGTGGAGTTGCTCTGCGGGACAGTGTGAGAAAGCACT
TCTCGAACCTAAAGTGGTTTACGACGGGAAATCTCCTGGAAGCCCCACCT
AAAAGCCACTTCAACGACGAGCGAGTGGTGAAAACCATCACGGATCTGCA
TCATCTGGAACACCAGAGACTATATAATTATGTGATGGTGAAGAATATGT
GGTCTATGCGGTATCGCGCAAGCTTTCTAGACCAT
BO30309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12868-RB | 504 | CG12868-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12868-RB | 688 | CG12868-RB | 98..598 | 17..517 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14604639..14605106 | 517..50 | 2340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:05:15 has no hits.
BO30309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:41 Download gff for
BO30309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12868-RB | 136..636 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:23 Download gff for
BO30309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12868-RB | 98..598 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:41 Download gff for
BO30309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12868-RB | 98..598 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:41 Download gff for
BO30309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14604637..14605105 | 51..519 | 99 | <- | Minus |
| 2R | 14605167..14605200 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:23 Download gff for
BO30309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10492142..10492610 | 51..519 | 99 | <- | Minus |
| arm_2R | 10492672..10492705 | 17..50 | 100 | | Minus |
BO30309.pep Sequence
Translation from 16 to 535
> BO30309.pep
MTTNSVTDKNTEGDYNLDEEIDSHLRKLFCLKPKAETPKLNPYIVEFFGV
LSLTDLRAPQRKLWVIYHAKQPDLDKTVDEIHEKYGKKNMFDLYRTPVFS
GVALRDSVRKHFSNLKWFTTGNLLEAPPKSHFNDERVVKTITDLHHLEHQ
RLYNYVMVKNMWSMRYRASFLDH
BO30309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12868-PB | 167 | CG12868-PB | 1..167 | 1..167 | 900 | 100 | Plus |
| CG33468-PA | 172 | CG33468-PA | 1..159 | 1..160 | 405 | 47.5 | Plus |
| CG33469-PB | 160 | CG33469-PB | 1..150 | 17..166 | 349 | 39.3 | Plus |
| CG33469-PA | 160 | CG33469-PA | 1..150 | 17..166 | 349 | 39.3 | Plus |
