BO30315.complete Sequence
688 bp assembled on 2011-09-22
GenBank Submission: KX797789
> BO30315.complete
GAAGTTATCAGTCGACATGGATATAAAAGTATGGCGACTCCTTGGCCAGA
GCTGCAGAAGGAGTACAGCGCTGGTCAGGCACAGATCGAGCAGGATGCCG
TGGTTGCCCATTTCCATTATGGCAATGGCGCTGCTTAGCCTGACAAATAA
AGGAATCGCCAGTCAGTACGCCAGCGATGAAGGTTTGGACGAGATGGTGG
GTCTAAGGAGTCTGGAACACCGCGCGGAGGAGCAGCAGCCCGATCGCAGT
ACATCGAAAATGCTCAGTGCCCTATTCGGATTCAGTCCCAGCACTCCACA
TCCCACAGAGATGGCGATGGTCATGCCCCATCAGCTGCCGCCCATGTACT
ATAACGATTTCTATGAGGATCTGGTGACCACCAAACGCAATGATGTCCAT
TCCGCAGGCTGCGACTGCAAAGTTACGAATGAGCTCGTGGATCTGGGTGG
TCTGCACTTCCCTCGCTTTCTGATGAATGCCGTTTGCGAATCGGGCGCTG
GTCGGGATCTGGCCAAGTGCTCGCATGGATCCAATTGCAGGCCACTGGAA
TATAAGGTAAAGGTCCTGGCACAGACCTCTCAGTCCGATCACCCCTATTC
GTGGATGAACAAGGATCAACCTTGGCAGTTCAAAACGGTCACCGTAACTG
CCGGCTGCTTCTGCACAAAGGCAAGCTTTCTAGACCAT
BO30315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptth-RF | 657 | CG13687-PF | 1..654 | 17..670 | 3255 | 99.8 | Plus |
Ptth-RE | 579 | CG13687-PE | 1..576 | 95..670 | 2880 | 100 | Plus |
Ptth-RG | 555 | CG13687-PG | 1..552 | 119..670 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptth-RF | 1019 | CG13687-RF | 297..950 | 17..670 | 3255 | 99.8 | Plus |
Ptth-RE | 673 | CG13687-RE | 1..604 | 67..670 | 3005 | 99.8 | Plus |
Ptth-RG | 782 | CG13687-RG | 146..713 | 103..670 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 576081..576405 | 427..103 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 575780..576023 | 670..427 | 1220 | 100 | Minus |
2L | 23513712 | 2L | 576514..576600 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:08:30 has no hits.
BO30315.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:43 Download gff for
BO30315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RB | 297..950 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:44 Download gff for
BO30315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RE | 297..950 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:48 Download gff for
BO30315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RF | 297..950 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:48 Download gff for
BO30315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 575777..576022 | 428..672 | 99 | <- | Minus |
2L | 576081..576404 | 104..427 | 100 | <- | Minus |
2L | 576514..576600 | 17..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:44 Download gff for
BO30315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 576081..576404 | 104..427 | 100 | <- | Minus |
arm_2L | 575777..576022 | 428..672 | 99 | <- | Minus |
arm_2L | 576514..576600 | 17..103 | 98 | | Minus |
BO30315.pep Sequence
Translation from 16 to 688
> BO30315.pep
MDIKVWRLLGQSCRRSTALVRHRSSRMPWLPISIMAMALLSLTNKGIASQ
YASDEGLDEMVGLRSLEHRAEEQQPDRSTSKMLSALFGFSPSTPHPTEMA
MVMPHQLPPMYYNDFYEDLVTTKRNDVHSAGCDCKVTNELVDLGGLHFPR
FLMNAVCESGAGRDLAKCSHGSNCRPLEYKVKVLAQTSQSDHPYSWMNKD
QPWQFKTVTVTAGCFCTKASFLDH
BO30315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptth-PF | 218 | CG13687-PF | 1..218 | 1..218 | 1167 | 99.5 | Plus |
Ptth-PE | 192 | CG13687-PE | 1..192 | 27..218 | 1039 | 100 | Plus |
Ptth-PG | 184 | CG13687-PG | 1..184 | 35..218 | 993 | 100 | Plus |