Clone BO30315 Report

Search the DGRC for BO30315

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:303
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptPtth-RD
Protein status:BO30315.pep: Imported from assembly
Sequenced Size:688

Clone Sequence Records

BO30315.complete Sequence

688 bp assembled on 2011-09-22

GenBank Submission: KX797789

> BO30315.complete
GAAGTTATCAGTCGACATGGATATAAAAGTATGGCGACTCCTTGGCCAGA
GCTGCAGAAGGAGTACAGCGCTGGTCAGGCACAGATCGAGCAGGATGCCG
TGGTTGCCCATTTCCATTATGGCAATGGCGCTGCTTAGCCTGACAAATAA
AGGAATCGCCAGTCAGTACGCCAGCGATGAAGGTTTGGACGAGATGGTGG
GTCTAAGGAGTCTGGAACACCGCGCGGAGGAGCAGCAGCCCGATCGCAGT
ACATCGAAAATGCTCAGTGCCCTATTCGGATTCAGTCCCAGCACTCCACA
TCCCACAGAGATGGCGATGGTCATGCCCCATCAGCTGCCGCCCATGTACT
ATAACGATTTCTATGAGGATCTGGTGACCACCAAACGCAATGATGTCCAT
TCCGCAGGCTGCGACTGCAAAGTTACGAATGAGCTCGTGGATCTGGGTGG
TCTGCACTTCCCTCGCTTTCTGATGAATGCCGTTTGCGAATCGGGCGCTG
GTCGGGATCTGGCCAAGTGCTCGCATGGATCCAATTGCAGGCCACTGGAA
TATAAGGTAAAGGTCCTGGCACAGACCTCTCAGTCCGATCACCCCTATTC
GTGGATGAACAAGGATCAACCTTGGCAGTTCAAAACGGTCACCGTAACTG
CCGGCTGCTTCTGCACAAAGGCAAGCTTTCTAGACCAT

BO30315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ptth-RF 657 CG13687-PF 1..654 17..670 3255 99.8 Plus
Ptth-RE 579 CG13687-PE 1..576 95..670 2880 100 Plus
Ptth-RG 555 CG13687-PG 1..552 119..670 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
Ptth-RF 1019 CG13687-RF 297..950 17..670 3255 99.8 Plus
Ptth-RE 673 CG13687-RE 1..604 67..670 3005 99.8 Plus
Ptth-RG 782 CG13687-RG 146..713 103..670 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 576081..576405 427..103 1625 100 Minus
2L 23513712 2L 575780..576023 670..427 1220 100 Minus
2L 23513712 2L 576514..576600 103..17 420 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 08:08:30 has no hits.

BO30315.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:43 Download gff for BO30315.complete
Subject Subject Range Query Range Percent Splice Strand
Ptth-RB 297..950 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:44 Download gff for BO30315.complete
Subject Subject Range Query Range Percent Splice Strand
Ptth-RE 297..950 17..672 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:48 Download gff for BO30315.complete
Subject Subject Range Query Range Percent Splice Strand
Ptth-RF 297..950 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:48 Download gff for BO30315.complete
Subject Subject Range Query Range Percent Splice Strand
2L 575777..576022 428..672 99 <- Minus
2L 576081..576404 104..427 100 <- Minus
2L 576514..576600 17..103 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:44 Download gff for BO30315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 576081..576404 104..427 100 <- Minus
arm_2L 575777..576022 428..672 99 <- Minus
arm_2L 576514..576600 17..103 98   Minus

BO30315.pep Sequence

Translation from 16 to 688

> BO30315.pep
MDIKVWRLLGQSCRRSTALVRHRSSRMPWLPISIMAMALLSLTNKGIASQ
YASDEGLDEMVGLRSLEHRAEEQQPDRSTSKMLSALFGFSPSTPHPTEMA
MVMPHQLPPMYYNDFYEDLVTTKRNDVHSAGCDCKVTNELVDLGGLHFPR
FLMNAVCESGAGRDLAKCSHGSNCRPLEYKVKVLAQTSQSDHPYSWMNKD
QPWQFKTVTVTAGCFCTKASFLDH

BO30315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ptth-PF 218 CG13687-PF 1..218 1..218 1167 99.5 Plus
Ptth-PE 192 CG13687-PE 1..192 27..218 1039 100 Plus
Ptth-PG 184 CG13687-PG 1..184 35..218 993 100 Plus