BO30317.complete Sequence
406 bp assembled on 2011-09-22
GenBank Submission: KX794296
> BO30317.complete
GAAGTTATCAGTCGACATGCTTTTCTTCAATCGATGGGGCAAGATCCGGA
TGCTGGAGCCGTATCAGCCCAAGTTCCAGCAGCAGCATCGCAGTTCCTGT
CCGCTGGTCGATTTGGATGCTGTTACCACGCACCAGCGCTCCTCCGTGTC
GCGCATGTCGATGGGCATGGTGCACAATCTCAATATGCCGACGTGTCAAT
TTGCGGCCTATAATCCCAACATTTATGCCAAGGGTTACGCCTCGCATGTT
TCGGCGTCGCGTCCCCGCCAGAATTCGGTGTTTGTTGGGGCCAGTACCAG
TCACTATTTGATGCCAAGACCACCGAGGAAGACCCGATCGGCGATGGACC
TGCACTCGATGGTGCTGGACGAGAGTGCCGAACAGGTGGCAAGCTTTCTA
GACCAT
BO30317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12541-RE | 792 | CG12541-PE | 418..789 | 17..388 | 1860 | 100 | Plus |
| CG12541-RD | 792 | CG12541-PD | 418..789 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12541-RE | 2529 | CG12541-RE | 826..1197 | 17..388 | 1860 | 100 | Plus |
| CG12541-RD | 1752 | CG12541-RD | 826..1197 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7022940..7023095 | 388..233 | 780 | 100 | Minus |
| X | 23542271 | X | 7032093..7032212 | 136..17 | 600 | 100 | Minus |
| X | 23542271 | X | 7031833..7031934 | 235..134 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..693 | 89..37 | 103 | 66 | Minus |
BO30317.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:08 Download gff for
BO30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12541-RC | 1079..1450 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:27 Download gff for
BO30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12541-RD | 826..1197 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:34 Download gff for
BO30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12541-RD | 826..1197 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:34 Download gff for
BO30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7022938..7023094 | 234..390 | 98 | <- | Minus |
| X | 7031835..7031931 | 137..233 | 100 | <- | Minus |
| X | 7032093..7032212 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:27 Download gff for
BO30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6916971..6917127 | 234..390 | 98 | <- | Minus |
| arm_X | 6925868..6925964 | 137..233 | 100 | <- | Minus |
| arm_X | 6926126..6926245 | 17..136 | 100 | | Minus |
BO30317.pep Sequence
Translation from 16 to 406
> BO30317.pep
MLFFNRWGKIRMLEPYQPKFQQQHRSSCPLVDLDAVTTHQRSSVSRMSMG
MVHNLNMPTCQFAAYNPNIYAKGYASHVSASRPRQNSVFVGASTSHYLMP
RPPRKTRSAMDLHSMVLDESAEQVASFLDH
BO30317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12541-PE | 263 | CG12541-PE | 140..263 | 1..124 | 656 | 100 | Plus |
| CG12541-PD | 263 | CG12541-PD | 140..263 | 1..124 | 656 | 100 | Plus |
