Clone BO30330 Report

Search the DGRC for BO30330

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:303
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG42559-RA
Protein status:BO30330.pep: Imported from assembly
Sequenced Size:490

Clone Sequence Records

BO30330.complete Sequence

490 bp assembled on 2011-09-22

GenBank Submission: KX795611

> BO30330.complete
GAAGTTATCAGTCGACATGTTTCCTGTTGCACGAATCTTAGGCTCGGCAT
CGTGCAACAGGCTATTTCAACCTCAGGTGCTATGTCAAGAAAGAGTTTGT
TGGCCTTCCAATGAGTTGCACAGAAATTTACCAAGGCATAGAAACTTTTA
CCACGGTAGAAACATTTTCCACCCAAGGTCGAATAATAATTTAAACGAAT
TTCCTGCTAAACGTCAATTCACTGACAAATTTTCCGAGAAGGGCAGAGGC
GAGGAACTTAACTATGTTCTCAAACTTGCCTCAGAGCAATTTATGAAGAT
AAAAAAGAACAGGGTTAAAGAAATCGCCAATGATATCGTCAAATTGAAAG
AGGAGATCAAGATTTTGGAATCCAAAACTAGCCACAAATCAAGGAAACAC
AAGGAGAATCTGCTAAAGGAATTGAAAGCTCTGAAGGATTTGTTGGAGCA
ATTCAAAAAGAGTCTCGAAAAAGCAAGCTTTCTAGACCAT

BO30330.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-RC 459 CG42559-PC 1..456 17..472 2280 100 Plus
CG42559-RB 459 CG42559-PB 1..456 17..472 2280 100 Plus
CG42559-RA 459 CG42559-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RA 880 CG42560-RA 100..556 16..472 2285 100 Plus
CG42559-RC 942 CG42559-RC 100..556 16..472 2285 100 Plus
CG42559-RB 939 CG42559-RB 100..556 16..472 2285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23600061..23600255 472..278 975 100 Minus
2R 25286936 2R 23600439..23600550 210..99 560 100 Minus
2R 25286936 2R 23600605..23600688 99..16 420 100 Minus
2R 25286936 2R 23600313..23600380 278..211 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:57:02 has no hits.

BO30330.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:14 Download gff for BO30330.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 107..551 23..467 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:28 Download gff for BO30330.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RB 107..551 23..467 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:34 Download gff for BO30330.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RB 107..551 23..467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:34 Download gff for BO30330.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600439..23600549 100..210 100 <- Minus
2R 23600605..23600681 23..99 100   Minus
2R 23600066..23600255 278..467 100 <- Minus
2R 23600314..23600380 211..277 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:28 Download gff for BO30330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19487589..19487778 278..467 100 <- Minus
arm_2R 19487837..19487903 211..277 100 <- Minus
arm_2R 19487962..19488072 100..210 100 <- Minus
arm_2R 19488128..19488204 23..99 100   Minus

BO30330.pep Sequence

Translation from 16 to 490

> BO30330.pep
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EKASFLDH

BO30330.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-PC 152 CG42559-PC 1..152 1..152 794 100 Plus
CG42559-PB 152 CG42559-PB 1..152 1..152 794 100 Plus
CG42559-PA 152 CG42559-PA 1..152 1..152 794 100 Plus