BO30340.complete Sequence
1369 bp assembled on 2011-09-22
GenBank Submission: KX799746
> BO30340.complete
GAAGTTATCAGTCGACATGGCCCATACCATCAAGTTGGACTGGATTAGGA
GGATCCTGAATCTTTGCGGCTCTCGACAATGTCGCCTAATGCATGATGAT
GCTGAGGCGCGGATCCGCACGCAGAGTCCCTGGAGACACCTGATGCGATT
GACCAGGAATAACTCGAGCAGTACTTCCGGTGGCAATGAACCCCGCAGAC
AGGACCCAAATAAACCGAAGCCGAATAGCAAGCAAATCTCATACACCGAA
CGGCAAACACCTTTTAGGATCAACACACATCCAAATGCTTACCTAGTAGG
TATGCATCCTTTGGTCAGAGAGCGGGACAAAAGGACGAAGAGGCATAAGC
GACGCCTTCCATTTGAAAAGTCAGCAACATTGAGGTTACACAATGCGCAG
CGAAGAGAGGAGCAGCTGGCGAGGACCATGCTATCCCAGGATTGCAGTGG
CCCTCACTCATCCAGCCATACCGCCATACCGCTTAAGATTCTTCAAATGA
CGCAAAGGGATCGTATGATGTCCTCGCAGCTGGTAATTGATGCGATGAGG
ACCAGGAATATGGAGAGAATGGTGCGCAAATCGGAGGCCAGGATGTTGAA
CGAGCGGGTCAAGAAGCTCCTGGAGAAACAGAAAGAATCAAAGTTAGAAG
GGAAGAAGCAGCAGTCGGATGATGACTCCACTGTTCCCGATCCAAAGATC
ATGGGGCCGGAACAGCGGCCACTGGAGGTCCAGGCGGTGGTGCAATTGCT
AAAGAAGGCCATTTCCCTGGTCCATTTCGGTCACGAGAATCCCCCGAAGG
TGGTGAAGGATGTAAGGATCTCCAGGATGCAGACCAAACTGGACATAGAT
GGCCTGCATCCTTGCGGCAGCTCCATTGATTCCTTTGCCAACACTGACAG
CCCGCAGTCATCCAAAGCCTATCACATGCGCATTCGCTGCACCAAGAGTC
CAATATCGGAAATCCAAATCAAATCCAACTCTCAGCAAATAGCCGTCAGT
CTGATGAAGGAGGAGCAGAGGCGCCTGGATCGATTGAGAGCGGAAAAGGT
GCAATTAATCGGGTGTAACGATAGCACAAAACTGGGTTTCATAAACAGGA
ATGAAGGTGATGGCAGGTCGGCAAACTCCACAAATCCTGCCACTTCATCC
AAGCCAACAGATTTGAACATGAACTCCTTAATTGTCGATCCCAAATCTTT
TCTCACAAAGGTGCTCGATAAGAAGGAAGTTCTGTCGGTTGATCAGGTTA
ATAATAATAATTTCGTAGAAAATCCAGATGTCTTCTCAAAGGCACTGAAA
AGGAAACCAGCGACCAAGTCCAATAGAGGACCTGCTAAACACTTGCCACA
AGCAAGCTTTCTAGACCAT
BO30340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15196-RB | 1338 | CG15196-PB | 1..1335 | 17..1351 | 6675 | 100 | Plus |
| CG15196-RC | 1329 | CG15196-PC | 1..1326 | 17..1351 | 6505 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15196-RB | 1587 | CG15196-RB | 108..1442 | 17..1351 | 6675 | 100 | Plus |
| CG15196-RC | 1578 | CG15196-RC | 108..1433 | 17..1351 | 6505 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11410458..11411522 | 287..1351 | 5325 | 100 | Plus |
| X | 23542271 | X | 11410199..11410393 | 93..287 | 975 | 100 | Plus |
| X | 23542271 | X | 11410054..11410129 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3269..3325 | 1282..1335 | 124 | 73.7 | Plus |
BO30340.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:19 Download gff for
BO30340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 108..1442 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:41 Download gff for
BO30340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 108..1442 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:32 Download gff for
BO30340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15196-RB | 108..1442 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:32 Download gff for
BO30340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11410054..11410129 | 17..92 | 100 | -> | Plus |
| X | 11410199..11410393 | 93..287 | 100 | -> | Plus |
| X | 11410459..11411522 | 288..1353 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:41 Download gff for
BO30340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11304087..11304162 | 17..92 | 100 | -> | Plus |
| arm_X | 11304232..11304426 | 93..287 | 100 | -> | Plus |
| arm_X | 11304492..11305555 | 288..1353 | 99 | | Plus |
BO30340.pep Sequence
Translation from 16 to 1369
> BO30340.pep
MAHTIKLDWIRRILNLCGSRQCRLMHDDAEARIRTQSPWRHLMRLTRNNS
SSTSGGNEPRRQDPNKPKPNSKQISYTERQTPFRINTHPNAYLVGMHPLV
RERDKRTKRHKRRLPFEKSATLRLHNAQRREEQLARTMLSQDCSGPHSSS
HTAIPLKILQMTQRDRMMSSQLVIDAMRTRNMERMVRKSEARMLNERVKK
LLEKQKESKLEGKKQQSDDDSTVPDPKIMGPEQRPLEVQAVVQLLKKAIS
LVHFGHENPPKVVKDVRISRMQTKLDIDGLHPCGSSIDSFANTDSPQSSK
AYHMRIRCTKSPISEIQIKSNSQQIAVSLMKEEQRRLDRLRAEKVQLIGC
NDSTKLGFINRNEGDGRSANSTNPATSSKPTDLNMNSLIVDPKSFLTKVL
DKKEVLSVDQVNNNNFVENPDVFSKALKRKPATKSNRGPAKHLPQASFLD
H
BO30340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15196-PB | 445 | CG15196-PB | 1..445 | 1..445 | 2292 | 100 | Plus |
| CG15196-PC | 442 | CG15196-PC | 1..442 | 1..445 | 2263 | 99.3 | Plus |
