BO30341.complete Sequence
1273 bp assembled on 2012-03-06
GenBank Submission: KX794185
> BO30341.complete
GAAGTTATCAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGA
AATCACATGACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTC
CAAGCTTCGCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAA
CAAAGGCCCCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGA
CTGGCGGTGGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAA
TCGGGTCGCTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCT
GGGATCTCAACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGC
ACAGTCATCACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATT
CACGGTCCGGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAAC
CTCTCATCTGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAA
GCTTTACGCGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGT
GGTAGTGGCTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCG
CAGCACAGAGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATT
CGCTGCTAACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAA
ACCCGCACCTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGA
AGTCACATCCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAAC
ATCCGCGGAGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGC
AGCTTTGTTGGTACACGAACCCTGGACTCGCCGCAAACACCCGTCATTGA
CAACAGTCCTCCCGAATTGGCACGAAAGCAGCAGCAGCTCCACCCGCACC
AAGTGCATCTGGATGTCGGTCTGTCGCCTGTAGTCTCCGCTGGTCAGCTG
CCACATCGCATGAACGGAATAAATCGTATCGGCAACGGTGGCGCACCCGA
ACGATCGTTAAGCAGCGCCTCGCTAGAAGATGTCCTAGCCTCGCTATTAG
GACTACCAACTACCCTTTTATCCGGCCAGAACAGCAATTCCTACAGCAGC
TACACTCCCAATGCGGCGACAACAGGTATGAACCTCATGCGCAGCTTCTC
GGCAGCAGCTGGAGGTGCAATCAGCCGCCGAACTGCAGCGGCTTCGTCGC
CGGAGGCAAGCTTTCTAGACCAT
BO30341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42748-RF | 1242 | CG42748-PF | 1..1239 | 17..1255 | 6195 | 100 | Plus |
CG42748-RL | 2469 | CG42748-PL | 1..1229 | 17..1255 | 6010 | 99.2 | Plus |
CG42748-RK | 6573 | CG42748-PK | 4099..5333 | 29..1255 | 5735 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42748-RF | 4450 | CG42748-RF | 120..1359 | 16..1255 | 6200 | 100 | Plus |
CG42748-RL | 5823 | CG42748-RL | 120..1349 | 16..1255 | 6015 | 99.2 | Plus |
CG42748-RK | 9304 | CG42748-RK | 4979..6213 | 29..1255 | 5735 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22154798..22155408 | 29..639 | 3055 | 100 | Plus |
2L | 23513712 | 2L | 22158511..22158721 | 833..1043 | 1055 | 100 | Plus |
2L | 23513712 | 2L | 22156620..22156817 | 639..836 | 990 | 100 | Plus |
2L | 23513712 | 2L | 22160207..22160349 | 1043..1185 | 715 | 100 | Plus |
2L | 23513712 | 2L | 22161678..22161747 | 1186..1255 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:27:53 has no hits.
BO30341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 10:21:05 Download gff for
BO30341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RF | 127..1359 | 23..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:58 Download gff for
BO30341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RF | 127..1359 | 23..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:47 Download gff for
BO30341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42748-RF | 127..1359 | 23..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:47 Download gff for
BO30341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22154792..22155408 | 23..639 | 99 | -> | Plus |
2L | 22156621..22156815 | 640..834 | 100 | -> | Plus |
2L | 22158513..22158721 | 835..1043 | 100 | -> | Plus |
2L | 22160208..22160349 | 1044..1185 | 100 | -> | Plus |
2L | 22161678..22161747 | 1186..1257 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:58 Download gff for
BO30341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22154792..22155408 | 23..639 | 99 | -> | Plus |
arm_2L | 22156621..22156815 | 640..834 | 100 | -> | Plus |
arm_2L | 22158513..22158721 | 835..1043 | 100 | -> | Plus |
arm_2L | 22160208..22160349 | 1044..1185 | 100 | -> | Plus |
arm_2L | 22161678..22161747 | 1186..1257 | 97 | | Plus |
BO30341.pep Sequence
Translation from 16 to 1273
> BO30341.pep
MFDQPPENELQKSHDHNPGALSEHQLRVQASLQRLNIPDWFRHYNKGPEK
AADGENACTSATGGGYRPGNFTRKRAQESGRWQGLNSKTTSLSSLGSQRS
DRSPLLMSPSAHSHHGGQSSYSCGSTTIHGPAPVQIGMGATRWSTSHLNS
TQMSPGASQRGSFTRGAPINSSFISVASGSGLLRNSYRQPYLGWRSTEKL
SQRTPHERLANSLLTQRTAPPSTRAGNETRTLHSVSTEIQSSIKEVTSAI
VHFVNDQQQSQHPRSRSTSPNSRCWLESSFVGTRTLDSPQTPVIDNSPPE
LARKQQQLHPHQVHLDVGLSPVVSAGQLPHRMNGINRIGNGGAPERSLSS
ASLEDVLASLLGLPTTLLSGQNSNSYSSYTPNAATTGMNLMRSFSAAAGG
AISRRTAAASSPEASFLDH
BO30341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42748-PF | 413 | CG42748-PF | 1..413 | 1..413 | 2147 | 100 | Plus |
CG42748-PL | 822 | CG42748-PL | 1..414 | 1..414 | 2021 | 94.4 | Plus |
CG42748-PK | 2190 | CG42748-PK | 1367..1782 | 5..414 | 1982 | 93 | Plus |
CG42748-PH | 778 | CG42748-PH | 1..343 | 1..343 | 1811 | 100 | Plus |
CG42748-PE | 349 | CG6448-PF | 1..342 | 1..342 | 1807 | 100 | Plus |