Clone BO30341 Report

Search the DGRC for BO30341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:303
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG42748-RF
Protein status:BO30341.pep: Imported from assembly
Sequenced Size:1273

Clone Sequence Records

BO30341.complete Sequence

1273 bp assembled on 2012-03-06

GenBank Submission: KX794185

> BO30341.complete
GAAGTTATCAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGA
AATCACATGACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTC
CAAGCTTCGCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAA
CAAAGGCCCCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGA
CTGGCGGTGGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAA
TCGGGTCGCTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCT
GGGATCTCAACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGC
ACAGTCATCACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATT
CACGGTCCGGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAAC
CTCTCATCTGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAA
GCTTTACGCGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGT
GGTAGTGGCTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCG
CAGCACAGAGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATT
CGCTGCTAACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAA
ACCCGCACCTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGA
AGTCACATCCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAAC
ATCCGCGGAGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGC
AGCTTTGTTGGTACACGAACCCTGGACTCGCCGCAAACACCCGTCATTGA
CAACAGTCCTCCCGAATTGGCACGAAAGCAGCAGCAGCTCCACCCGCACC
AAGTGCATCTGGATGTCGGTCTGTCGCCTGTAGTCTCCGCTGGTCAGCTG
CCACATCGCATGAACGGAATAAATCGTATCGGCAACGGTGGCGCACCCGA
ACGATCGTTAAGCAGCGCCTCGCTAGAAGATGTCCTAGCCTCGCTATTAG
GACTACCAACTACCCTTTTATCCGGCCAGAACAGCAATTCCTACAGCAGC
TACACTCCCAATGCGGCGACAACAGGTATGAACCTCATGCGCAGCTTCTC
GGCAGCAGCTGGAGGTGCAATCAGCCGCCGAACTGCAGCGGCTTCGTCGC
CGGAGGCAAGCTTTCTAGACCAT

BO30341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42748-RF 1242 CG42748-PF 1..1239 17..1255 6195 100 Plus
CG42748-RL 2469 CG42748-PL 1..1229 17..1255 6010 99.2 Plus
CG42748-RK 6573 CG42748-PK 4099..5333 29..1255 5735 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42748-RF 4450 CG42748-RF 120..1359 16..1255 6200 100 Plus
CG42748-RL 5823 CG42748-RL 120..1349 16..1255 6015 99.2 Plus
CG42748-RK 9304 CG42748-RK 4979..6213 29..1255 5735 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22154798..22155408 29..639 3055 100 Plus
2L 23513712 2L 22158511..22158721 833..1043 1055 100 Plus
2L 23513712 2L 22156620..22156817 639..836 990 100 Plus
2L 23513712 2L 22160207..22160349 1043..1185 715 100 Plus
2L 23513712 2L 22161678..22161747 1186..1255 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:27:53 has no hits.

BO30341.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-06 10:21:05 Download gff for BO30341.complete
Subject Subject Range Query Range Percent Splice Strand
CG42748-RF 127..1359 23..1257 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:58 Download gff for BO30341.complete
Subject Subject Range Query Range Percent Splice Strand
CG42748-RF 127..1359 23..1257 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:47 Download gff for BO30341.complete
Subject Subject Range Query Range Percent Splice Strand
CG42748-RF 127..1359 23..1257 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:47 Download gff for BO30341.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22154792..22155408 23..639 99 -> Plus
2L 22156621..22156815 640..834 100 -> Plus
2L 22158513..22158721 835..1043 100 -> Plus
2L 22160208..22160349 1044..1185 100 -> Plus
2L 22161678..22161747 1186..1257 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:58 Download gff for BO30341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22154792..22155408 23..639 99 -> Plus
arm_2L 22156621..22156815 640..834 100 -> Plus
arm_2L 22158513..22158721 835..1043 100 -> Plus
arm_2L 22160208..22160349 1044..1185 100 -> Plus
arm_2L 22161678..22161747 1186..1257 97   Plus

BO30341.pep Sequence

Translation from 16 to 1273

> BO30341.pep
MFDQPPENELQKSHDHNPGALSEHQLRVQASLQRLNIPDWFRHYNKGPEK
AADGENACTSATGGGYRPGNFTRKRAQESGRWQGLNSKTTSLSSLGSQRS
DRSPLLMSPSAHSHHGGQSSYSCGSTTIHGPAPVQIGMGATRWSTSHLNS
TQMSPGASQRGSFTRGAPINSSFISVASGSGLLRNSYRQPYLGWRSTEKL
SQRTPHERLANSLLTQRTAPPSTRAGNETRTLHSVSTEIQSSIKEVTSAI
VHFVNDQQQSQHPRSRSTSPNSRCWLESSFVGTRTLDSPQTPVIDNSPPE
LARKQQQLHPHQVHLDVGLSPVVSAGQLPHRMNGINRIGNGGAPERSLSS
ASLEDVLASLLGLPTTLLSGQNSNSYSSYTPNAATTGMNLMRSFSAAAGG
AISRRTAAASSPEASFLDH

BO30341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42748-PF 413 CG42748-PF 1..413 1..413 2147 100 Plus
CG42748-PL 822 CG42748-PL 1..414 1..414 2021 94.4 Plus
CG42748-PK 2190 CG42748-PK 1367..1782 5..414 1982 93 Plus
CG42748-PH 778 CG42748-PH 1..343 1..343 1811 100 Plus
CG42748-PE 349 CG6448-PF 1..342 1..342 1807 100 Plus