BO30342.complete Sequence
1872 bp assembled on 2011-10-14
GenBank Submission: KX794710
> BO30342.complete
TCGAAGTTATCAGTCGACATGGTTCGAGTATCGCTAGTTCCATTCATTAT
AATCGGATTTATGGCGCACTTTTGTGCGTGTGAGGATGTTACATCCTCAG
ATCTTCTGTATATTAAGACCATGGGACCCTCGGCGATTTTAACAAAAATG
CCGAACATAACCAATGAGTTTAGTTCAAGAATTTTCAGTTCTTTTCGCAT
ATTGCCATCATCAAAGCCAAAAACAAATGGATCGCTTAAGCGTAGTCAAA
ACGCCACGAACTTGAGTTACTCCTCCTCTGAGATTTCCAATCAAAGACGA
GTTCGACGAAAAGCAGCGGCCGACATGCTTAGCCGTAATATCTCAATGAT
TTTGGAAAATCTACTCAAACGCTACGAGCAATCCCAACTACCCACGCATG
GCCAGGGAGTTCCGACGGTGGTGCAAACGAATATCCTAATCCGTAGCATG
GGTCCAGTTTCCGAATTGGACATGGACTACTCGATGGATTGCTATTTCCG
GCAGTATTGGCGGGACAAACGGCTGAGCTTCAAGGGACCCATCAAGAGCT
TATCTCTGAGCATCAAAATGCTGGACAAGATCTGGAGGCCAGATACATAT
TTTTACAATGGCAAGCACTCGCAAATTCACATGATTACCGTGCCCAATAA
ATTGCTTCGATTGGATCAGAATGGAGGGATTCTGTATTCAATGAGACTAA
CAATTAAGGCTACTTGTCCCATGGAGCTGCAAAACTTTCCAATGGATAGA
CAATCATGCCCTCTAGTAATTGGAAGTTATGGCTATATTAACCAACAGTT
GATCTATGAATGGAAAAATCAGGACGATGCGGTGTCCTTTGTTCCAGGAA
TGACTCTAAATCAATTCGATCTCATTAGCATGATGCATCGCAATTTTACA
ACCGTTCGACGGGAAGGTGATTTTTCAGTCCTGCATGTAGCTTTTAATCT
CAAACGTCACACAGGATATTTTCTCATTCAAGTATATGTACCCTGTATTC
TGATCGTGGTACTGTCATGGGTCTCCTTCTGGATACATCGCGAAGCCACC
AGCGACAGAGTGAGTCTTTGCGTTACCTCAGTGCTGACCCTGTCCACCAT
TAGTCTGGACTCACGAACCGATTTGCCAAAAGTCAAATATGCCACAGCTT
TGGATTGGTTTCTATTGATGAGCTTTCTGTACTGCATTGCCACCCTGTTG
GAGTTTGCCGGTGTCCACTACTTTACAAAACTGGGAAGCGGAGAGAGTCC
GCAACTGGAGGATCAGTGGGAGGACATCTGTATAGCCAACTCATTATCGG
ATCATGCCGGCGAGGTGGATGGCGATGGTGAAGCTGACGCCGACCCATTT
GCGGATGAGGACTCCAGTAATGGCAGCGAAAATGATGACAACGAGGCTGG
AGCAAGTGAATCCGTTGAGTCCAAGAGCGGTGTCTGTGTATGCAACAAAA
ACGATGCTCTCGGTCTGGAATATGAGGTTTCGCTACAGAATTCACTAGCT
GGTGCTGGTTTTCTCAAAAGAAATGCTATTTTTTGTCCCACATATAACGA
TCCATCGTACATTTTGCCAAACACCATGGAGAGAACCACCCAAACGGAGC
CTCCGGCCGTTTCGCGATTGCATCAGATGTGGATGTGCCTGAAGAGCGAC
AACAGTTTCCGGAAACAACGAGAACGCAACGCTGCGGCCCAAAAGAGCGA
ACAAGGTGGCGCCAACTGCTATGTCAATAGTGTATCCCTAATCGATAGGG
TGGCGCGTATTGCCTTCCCCATGTCCTTTGCATTTCTGAACCTACTGTAC
TGGTGGGCCTACGGAATGTACAAGAAGGAGTTCTCATGGTCCAATATGAA
GTCAGCAAGCTTTCTAGACCAT
BO30342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 1839 | CG8916-PB | 1..1836 | 19..1854 | 9180 | 100 | Plus |
| CG8916-RC | 1533 | CG8916-PC | 1..1530 | 325..1854 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-RB | 2019 | CG8916-RB | 148..1983 | 19..1854 | 9180 | 100 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 185..1823 | 216..1854 | 8195 | 100 | Plus |
| CG8916-RC | 1859 | CG8916-RC | 148..185 | 19..56 | 190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15922468..15923107 | 56..695 | 3200 | 100 | Plus |
| X | 23542271 | X | 15923592..15924159 | 982..1549 | 2840 | 100 | Plus |
| X | 23542271 | X | 15924217..15924522 | 1549..1854 | 1530 | 100 | Plus |
| X | 23542271 | X | 15923320..15923525 | 779..984 | 1030 | 100 | Plus |
| X | 23542271 | X | 15923166..15923250 | 694..778 | 425 | 100 | Plus |
| X | 23542271 | X | 15922102..15922139 | 19..56 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:02:33 has no hits.
BO30342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:45 Download gff for
BO30342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 146..1983 | 17..1856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:46 Download gff for
BO30342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 146..1983 | 17..1856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:31 Download gff for
BO30342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8916-RB | 146..1983 | 17..1856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:31 Download gff for
BO30342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15922100..15922139 | 17..56 | 97 | -> | Plus |
| X | 15922469..15923107 | 57..695 | 100 | -> | Plus |
| X | 15923168..15923250 | 696..778 | 100 | -> | Plus |
| X | 15923320..15923522 | 779..981 | 100 | -> | Plus |
| X | 15923592..15924158 | 982..1548 | 100 | -> | Plus |
| X | 15924217..15924522 | 1549..1856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:46 Download gff for
BO30342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15816133..15816172 | 17..56 | 97 | -> | Plus |
| arm_X | 15816502..15817140 | 57..695 | 100 | -> | Plus |
| arm_X | 15817201..15817283 | 696..778 | 100 | -> | Plus |
| arm_X | 15817353..15817555 | 779..981 | 100 | -> | Plus |
| arm_X | 15817625..15818191 | 982..1548 | 100 | -> | Plus |
| arm_X | 15818250..15818555 | 1549..1856 | 99 | | Plus |
BO30342.pep Sequence
Translation from 18 to 1872
> BO30342.pep
MVRVSLVPFIIIGFMAHFCACEDVTSSDLLYIKTMGPSAILTKMPNITNE
FSSRIFSSFRILPSSKPKTNGSLKRSQNATNLSYSSSEISNQRRVRRKAA
ADMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSEL
DMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKH
SQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLV
IGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREG
DFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSL
CVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVH
YFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSS
NGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLK
RNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQ
RERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGM
YKKEFSWSNMKSASFLDH
BO30342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8916-PB | 612 | CG8916-PB | 1..612 | 1..612 | 3208 | 100 | Plus |
| CG8916-PC | 510 | CG8916-PC | 1..510 | 103..612 | 2700 | 100 | Plus |
| Rdl-PF | 606 | CG10537-PF | 26..356 | 79..404 | 592 | 38.6 | Plus |
| Rdl-PE | 606 | CG10537-PE | 26..356 | 79..404 | 592 | 38.9 | Plus |
| Lcch3-PC | 496 | CG17336-PC | 26..342 | 93..401 | 586 | 39.9 | Plus |
