BO30344.complete Sequence
3010 bp assembled on 2011-10-14
GenBank Submission: KX794877
> BO30344.complete
GAAGTTATCAGTCGACATGAAGACACGTTTCAATACCTTCGATATAATCT
GCGGAGTGGCGGAACTGCAAAAGCTGGTCGGCTGGCGAGTGAATCAGATC
TATGACGTGGATAACAAGACCTACCTCTTCCGGATGCAAGGGACCGGTGC
AGTGGAGAAGGTCACTCTGCTAATAGAATCTGGTACAAGATTCCATACCA
CTAGGTTCGAATGGCCCAAGAACATGGCTCCGTCCGGTTTCAGCATGAAG
TTGAGGAAGCACTTGAAGAACAAGCGCCTGGAAAAGGTTCAACAGATGGG
TAGCGATCGTATTGTTGACTTTCAGTTCGGTACCGGTGATGCCGCCTACC
ATGTTATTTTGGAGCTCTACGATCGTGGTAATGTGATCCTCACCGACTAC
GAGCTGACCACGTTATATATTTTGCGTCCGCATACGGAGGGCGAGAACCT
GCGCTTCGCCATGCGCGAGAAATATCCCGTGGAACGGGCCAAACAGCCCA
CGAAGGAACTGGAACTGGAAGCTTTGGTTAAGCTGTTGGAAAATGCCAGG
AACGGCGACTATTTGCGACAGATTCTAACACCCAACTTGGACTGTGGTCC
GGCAGTTATAGAGCATGTTCTCCTCTCACACGGCTTGGACAATCACGTTA
TCAAAAAGGAAACAACGGAAGAAACGCCGGAGGCGGAGGACAAGCCGGAG
AAGGGCGGTAAAAAGCAACGTAAGAAGCAACAGAATACGAAACTGGAACA
GAAACCATTTGACATGGTTAATGACTTGCCAATTCTTCAGCAAGCAGTAA
AGGATGCTCAAGAGCTTATAGCTGAGGGAAATAGTGGAAAAAGTAAAGGC
TACATTATTCAAGTTAAAGAGGAAAAGCCTACAGAGAATGGAACGGTGGA
GTTTTTCTTTAGAAACATCGAATTTCATCCCTACCTCTTTATTCAATTCA
AAAACTTTGAAAAGGCCACATTTGAGTCCTTTATGGAAGCCGTTGATGAA
TTTTACTCTACGCAAGAGTCGCAAAAGATTGACATGAAAACGCTACAGCA
AGAGCGTGAGGCACTAAAAAAGCTGTCTAATGTCAAGAATGACCACGCAA
AGCGTCTAGAGGAATTGACAAAAGTCCAAGATGTGGACAGAAAGAAAGCA
GAGCTAATAACGTCCAATCAAAGTCTGGTGGATAATGCAATTCGGGCTGT
TCAGTCAGCTATTGCCAGTCAATTATCCTGGCCGGATATTCACGAGCTTG
TAAAGGAGGCACAGGCAAATGGCGATGCTGTAGCTAGTTCCATAAAGCAG
CTTAAACTGGAGACTAATCATATATCCCTTATGCTCAGCGATCCATATGA
CAACGATGAAGACGACGATCTTAAGGATCCAGAGGTTACTGTTGTGGATG
TCGACTTGGCTCTGTCTGCTTGGGCCAATGCCCGTCGATACTACGATATG
AAACGTTCGGCTGCTCAAAAAGAAAAGAAAACTGTAGATGCTTCCCAAAA
AGCTCTTAAGTCTGCGGAGCGCAAGACGCAGCAGACGCTCAAGGAAGTGA
GGACTATATCGAACATAGTAAAGGCACGGAAAGTTTTCTGGTTTGAAAAG
TTTTACTGGTTTATCAGCTCTGAAAATTATTTGGTTATTGGAGGAAGAGA
TGCCCAGCAGAACGAGCTTATTGTTAAAAGATATATGCGTCCGAAAGACA
TTTATGTGCACGCTGAGATTCAAGGCGCCTCGAGTGTTATTATTCAAAAT
CCCACAGGAGAAGAAATACCTCCCAAAACGTTGCTAGAGGCAGGATCCAT
GGCTATTTCGTACAGTGTTGCTTGGGATGCCAAAGTGGTTACCAACTCGT
ACTGGGTAACAAGCGATCAGGTCAGCAAAACTGCACCGACTGGAGAGTAC
TTGGCAACGGGAAGCTTTATGATCAGAGGAAAGAAGAACTTCCTTCCCTC
CTGCCACCTGACCATGGGTCTAAGTTTACTTTTCAAGTTGGAGGATAGCT
TCATTGAGCGCCATTTGGGAGAGCGTAAAGTTAGAAGCCTGGAGGATGAT
CAAATAGATCCAAATGTTAAAGAAAACGAAGTTGAACATGATCTTTTGTC
GGATAATGAAGACGCTGATTCAAATATAAATCTATCGGAACCAAGCTCCA
ATACCGAAATTACAGCTTTTCCCAATACAGAAGTTAAGATTGAGCACGAT
ACTGGTCGCATTATAGTCAGATCCGACTCCGTAAATCCAGAGATTGAAGA
GACTAAAGAGAGTGAAGTTGTCCTAGACAAAATTTTGAAAAAGACGGACG
ATGAAGAAACGACCATTATTTTGGCTGGTCCAAGTCGTAAAAAGCAAGTA
AGTGCCAAAAAGACCAAGGAAGACAAGGCACGGGCGAAACAAGAAGCTGC
CAAGCAGGAAGTCCCTCCTGTGAGTAGTGAACCAAAAAATCCATCTCAAG
TTAAGAGAGGTCAGAAGGGAAAGCTCAAGAAAATGAAGCAAAAATACAAG
GATCAAGATGATGAAGAGCGGGAAATTCGCATGATGATTCTCAAGTCATC
GGGTAAGGAAAAGCCACAGGCCAGTGCCGATAAAGTGGTGGAGAAAAGTG
AGTCAACCAAGGAGTACGTGAAGCCAGAAAAAAGTGCAGCTCCCAAAAAC
CCAGTGGAACTGGACGATGCTGATGAAGTGCCCGTCGGTGGGGATGTGGA
TGTACTCAACAGTCTGACTGGACAGCCGCACGAAGGAGATGAGCTGCTGT
TCGCGATTCCAGTCGTTGCTCCCTATCAGGCTTTGCAAAACTACAAGTTT
AAAGTAAAGCTCACCCCAGGTACGGGAAAAAGAGGAAAGGCGGCGAAACT
AGCACTTAATATCTTCGCAAAGGAGAAGAGCTGCAGTGCTCGTGAGAAGG
ACTTACTGAAAAGTATAAAGGAAGAGTCGTTGGCCAGGAATATACCAGGA
AAGGTCAAGCTATCGGCCCCGCAACTTCAGAAGTATCACAAAGCAAGCTT
TCTAGACCAT
BO30344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clbn-RC | 2979 | CG11847-PC | 1..2976 | 17..2992 | 14880 | 100 | Plus |
| Clbn-RB | 2979 | CG11847-PB | 1..2976 | 17..2992 | 14880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clbn-RC | 3258 | CG11847-RC | 169..3145 | 16..2992 | 14885 | 100 | Plus |
| Clbn-RB | 3270 | CG11847-RB | 181..3157 | 16..2992 | 14885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25129671..25130790 | 1679..2798 | 5600 | 100 | Plus |
| 3R | 32079331 | 3R | 25128731..25129610 | 801..1680 | 4400 | 100 | Plus |
| 3R | 32079331 | 3R | 25127932..25128662 | 73..803 | 3655 | 100 | Plus |
| Y | 3667352 | Y | 3047785..3048433 | 1681..2346 | 2750 | 94.9 | Plus |
| Y | 3667352 | Y | 3026759..3027227 | 1269..801 | 2105 | 96.6 | Minus |
| Y | 3667352 | Y | 3034050..3034518 | 1269..801 | 2075 | 96.2 | Minus |
| Y | 3667352 | Y | 3041363..3041831 | 1269..801 | 2075 | 96.2 | Minus |
| Y | 3667352 | Y | 3042183..3042502 | 407..73 | 1370 | 94.6 | Minus |
| Y | 3667352 | Y | 3027579..3027898 | 407..73 | 1355 | 94.3 | Minus |
| Y | 3667352 | Y | 3034870..3035189 | 407..73 | 1355 | 94.3 | Minus |
| 3R | 32079331 | 3R | 25130847..25131042 | 2797..2992 | 980 | 100 | Plus |
| Y | 3667352 | Y | 3048688..3048883 | 2797..2992 | 875 | 96.4 | Plus |
| Y | 3667352 | Y | 3034703..3034866 | 660..492 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3042016..3042179 | 660..492 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3027412..3027575 | 660..492 | 645 | 93.5 | Minus |
| Y | 3667352 | Y | 3048436..3048574 | 2576..2714 | 635 | 97.1 | Plus |
| Y | 3667352 | Y | 3027296..3027414 | 803..685 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3034587..3034705 | 803..685 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3041900..3042018 | 803..685 | 595 | 100 | Minus |
| Y | 3667352 | Y | 3047606..3047721 | 1565..1680 | 535 | 97.4 | Plus |
| 3R | 32079331 | 3R | 25127810..25127867 | 16..73 | 290 | 100 | Plus |
| Y | 3667352 | Y | 3027963..3028020 | 73..16 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3035254..3035311 | 73..16 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3042567..3042624 | 73..16 | 290 | 100 | Minus |
| Y | 3667352 | Y | 3048579..3048631 | 2746..2798 | 250 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-26 22:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 515..619 | 2869..2976 | 146 | 62.4 | Plus |
BO30344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:46 Download gff for
BO30344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RC | 170..3145 | 17..2994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:19 Download gff for
BO30344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 182..3157 | 17..2994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:00 Download gff for
BO30344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clbn-RB | 182..3157 | 17..2994 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:00 Download gff for
BO30344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25127811..25127866 | 17..72 | 100 | -> | Plus |
| 3R | 25127932..25128661 | 73..802 | 100 | -> | Plus |
| 3R | 25128733..25129610 | 803..1680 | 100 | -> | Plus |
| 3R | 25129673..25130788 | 1681..2796 | 100 | -> | Plus |
| 3R | 25130847..25131042 | 2797..2994 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:19 Download gff for
BO30344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20953533..20953588 | 17..72 | 100 | -> | Plus |
| arm_3R | 20953654..20954383 | 73..802 | 100 | -> | Plus |
| arm_3R | 20954455..20955332 | 803..1680 | 100 | -> | Plus |
| arm_3R | 20955395..20956510 | 1681..2796 | 100 | -> | Plus |
| arm_3R | 20956569..20956764 | 2797..2994 | 98 | | Plus |
BO30344.pep Sequence
Translation from 16 to 3010
> BO30344.pep
MKTRFNTFDIICGVAELQKLVGWRVNQIYDVDNKTYLFRMQGTGAVEKVT
LLIESGTRFHTTRFEWPKNMAPSGFSMKLRKHLKNKRLEKVQQMGSDRIV
DFQFGTGDAAYHVILELYDRGNVILTDYELTTLYILRPHTEGENLRFAMR
EKYPVERAKQPTKELELEALVKLLENARNGDYLRQILTPNLDCGPAVIEH
VLLSHGLDNHVIKKETTEETPEAEDKPEKGGKKQRKKQQNTKLEQKPFDM
VNDLPILQQAVKDAQELIAEGNSGKSKGYIIQVKEEKPTENGTVEFFFRN
IEFHPYLFIQFKNFEKATFESFMEAVDEFYSTQESQKIDMKTLQQEREAL
KKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQSLVDNAIRAVQSAIA
SQLSWPDIHELVKEAQANGDAVASSIKQLKLETNHISLMLSDPYDNDEDD
DLKDPEVTVVDVDLALSAWANARRYYDMKRSAAQKEKKTVDASQKALKSA
ERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISSENYLVIGGRDAQQNE
LIVKRYMRPKDIYVHAEIQGASSVIIQNPTGEEIPPKTLLEAGSMAISYS
VAWDAKVVTNSYWVTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTM
GLSLLFKLEDSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLLSDNEDA
DSNINLSEPSSNTEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKESE
VVLDKILKKTDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVP
PVSSEPKNPSQVKRGQKGKLKKMKQKYKDQDDEEREIRMMILKSSGKEKP
QASADKVVEKSESTKEYVKPEKSAAPKNPVELDDADEVPVGGDVDVLNSL
TGQPHEGDELLFAIPVVAPYQALQNYKFKVKLTPGTGKRGKAAKLALNIF
AKEKSCSAREKDLLKSIKEESLARNIPGKVKLSAPQLQKYHKASFLDH
BO30344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clbn-PC | 992 | CG11847-PC | 1..992 | 1..992 | 5059 | 100 | Plus |
| Clbn-PB | 992 | CG11847-PB | 1..992 | 1..992 | 5059 | 100 | Plus |
