BO30345.complete Sequence
2602 bp assembled on 2011-10-14
GenBank Submission: KX795425
> BO30345.complete
GAAGTTATCAGTCGACATGAGCAGGAATCGTAGGCGAAGCTTCCCCAGCA
GCCAATATGAAGATAAGACCGCCGCTGCACAGCCAAGTGGAAGTAGCTTG
AGATCCCAATCTCTGTCCAGGCTGGACATCTCGGTTCAAAACTCATCCAT
CTATTACAATGATACGCGAAACACGCGACCACAAATGGTCAGTGTGGCCG
TCGGCACAGTTTCAACGGATATCCTGAATGGGCGCACATCATTCTTGTCC
CTTAGTCAGTCTCACGGGAGTGAAGTGGATTTGCCTTCGTTCTACGAAAG
CTTTAATCCAACTTTTCTTCCCAAGCTGCCTATCAGAAGATTTCCCCATA
TGCTTGTGGGGGCATCAAATGAGCCTGAGATTTCGAAAAACCAGCCAGCA
ATTCCACCATCTAGGCCAATTGAGCCAATATCTGAGGTGCCGTTTGTGGA
ACCGGCCTTTGAGAAAAAATACTCTAGGACCCGTGGATTTAGCAAGGAAT
TGTCCACACACAGGGATAATGAGAATGAATATATCGAGAGCACAGATGAG
GTGTCTCAGATGTTGAGCTTTACTAGCTATACGGATGAATATGATAGGGC
AGAACCACTCATTACCAAAACGCAAAAGTTTTATAAAAAGAGATCCCCCT
TGATTCCCAAATACGATTCCGAGGATTCATATGTGGTCCCTAAGGAAACC
GATCAACAGGAATCGGGTCTCTCGTTCAATGTAACTACAGTACAGTTGGC
CGATACCGCATCGCCGGAATCTTTCAGCGAATACGACGGAAATCGAACGC
GCAAGCAATCGTTCGACATGGAAAGTAAAAATTCGAAGGAGTCCTTTGAC
TTTAGCCGTGGTGGAAGACGACTTGGCTCCGGTATGGTTTTTATCTATAT
GGTGATACCACCGGACGGCGGATTCGGTTGGGTAATCATGGTGCTGTCCT
TCCTCGCCCAGCTGATAATCGATGGTTTAATTTTTACCATTGGGGTCTTA
TTGCCATCCATTGCCCAGGATCTGGATGTCTCCATATCGTCGGTATCGTT
TGTGGCCAGTGTCCAGATTGGTTGCTACTTCACTAGCGGAGCGTTTTCTG
CTGTCCTGATAAATCGTTTTGGTTTCCGAAAGGTAGCCATCGCTGGGGTC
CTGTGTTCCGCAGTTTCAATACTGGCGTCCAGTTGGAGCGTCAGCTTGAC
CATGCTGATCTTCTTTTACAGCGTCCTTGGTGGTATTACGTTGAGCATGA
TCTGGGCAAGTTCGCAGCTGATTGTTGGCTACTACTTTGAGCGGTACCGT
CCGATGGCCAATGGATTTTCCTGCAGCGGTGGCGGTGCGGGCATAGTACT
CTTCACGTTCCTCAACAGCTGGCTGGTGCCAATCATCGGATGGAGGAACA
TGCTGCGGACGCAGGCGGGGCTGATAATGTTGATCCTGTTGATGGTGGTC
GCCTATGTGGAGGTGGCTCCCACCCAGGTGGGCATGTACCATTTACCCGG
TTCTTCGGATACCAGTTCGGATGAGTATTACGGCAACTTCTACGTGCATG
ACTATTTACGTCAATCCGCGATGACTGCTAAAAGCCGGAGTATCCTAAGT
ACATATGAGCCACGCCCAAAAAAGAAAGGATGCGCCAAGTTCTGCCCCTC
CTGTTCGAACTGTTGTTGGAGGCGGCGGAAGAAGTCGCAAAATGCTGATG
AGCAGAATCTGCTCATCCGCCCGGCGCCCCTGGAGCGGGAGGATCTCTTC
TATACGGGTCCTGCCGAATACGAAAAGCCGCACAGCAAGGAGAACGTCGA
CGGCAAGGAGTTCCTACTAATGGGATCGGATAAGAACACCCAGCAAGTGA
ACTATGGCATCAAGAACATTCGTGTGGATGATGAACCCGATAGGATTTCT
AGAGTTCATAGGGAACGAAGATGGTCAAACGAGAATCAGAAAAAGCAAAA
TTCCTGTAGGAATAGCCGGTTTATGCTCACTGTGCTCAAACTATTCGACT
ACCGCCTGCTGAAACAGTTTGAGTTCAAGATTCTGGTGGCGTCCGCCTTT
CTGTTCCCGATGGGCTTTAATATACCCTTTGTTTACTCGTCTGCACGAAC
CACGATCCCCGTCGAATATGCCCGTATGATCGGCCCCATTATCGGAATTA
GTAATCTTGTGATGAGAAACATCCTTGGCATCCTCGCTTACAAAAGGCGT
AGTTGGACCCTCGGACTTTGTGGTTGTGGTCTAATTTTCGGTGGTGTTTC
CGTTTTGATTAGCGCCTTCTATGGAGAGAACTTGATTTGGTTCCAGTTTC
TGTATGGCTTCTCCTATGCTGTAGCGCCTGCTGTTTATTCCACACTGAGA
GGTTTGATATACGTGAAATACCTGGGACTTTCAAAACTGACCAACGCTTT
TGGGATTACCTCATTGGCCATGGGAATGGGCGCCTTTATTGGGACTACAA
TTGCTGGTAAATTGATAGGCATCACGGGAAACTATTCTGCTGCCTTTTGC
TTTGCGGGATTATGTCTCATAGTGTCCGGATTTCTGAAGCTTCTGCTGCC
CTTGCTTATTAAATGTCGCAACAGGATGGCCCAAGCAAGCTTTCTAGACC
AT
BO30345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RB | 2571 | CG12866-PB | 1..2568 | 17..2584 | 12840 | 100 | Plus |
| CG12866-RD | 2580 | CG12866-PD | 1..2577 | 17..2584 | 12715 | 99.7 | Plus |
| CG12866-RC | 2403 | CG12866-PC | 1..2400 | 185..2584 | 12000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RB | 2806 | CG12866-RB | 26..2593 | 17..2584 | 12840 | 100 | Plus |
| CG12866-RE | 2810 | CG12866-RE | 26..2597 | 17..2584 | 12765 | 99.8 | Plus |
| CG12866-RC | 2809 | CG12866-RC | 50..2596 | 38..2584 | 12735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14669982..14670590 | 1229..1837 | 3045 | 100 | Plus |
| 2R | 25286936 | 2R | 14668497..14669101 | 38..642 | 3025 | 100 | Plus |
| 2R | 25286936 | 2R | 14670652..14671144 | 1838..2330 | 2465 | 100 | Plus |
| 2R | 25286936 | 2R | 14669587..14669925 | 893..1231 | 1695 | 100 | Plus |
| 2R | 25286936 | 2R | 14671208..14671462 | 2330..2584 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 14669268..14669518 | 642..892 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:04:15 has no hits.
BO30345.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:47 Download gff for
BO30345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 26..2593 | 17..2586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:44 Download gff for
BO30345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 26..2593 | 17..2586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:22 Download gff for
BO30345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 26..2593 | 17..2586 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:22 Download gff for
BO30345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14671209..14671462 | 2331..2586 | 99 | | Plus |
| 2R | 14670652..14671144 | 1838..2330 | 100 | -> | Plus |
| 2R | 14668416..14668438 | 17..39 | 100 | -> | Plus |
| 2R | 14668499..14669100 | 40..641 | 100 | -> | Plus |
| 2R | 14669268..14669518 | 642..892 | 100 | -> | Plus |
| 2R | 14669587..14669923 | 893..1229 | 100 | -> | Plus |
| 2R | 14669983..14670590 | 1230..1837 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:44 Download gff for
BO30345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10558714..10558967 | 2331..2586 | 99 | | Plus |
| arm_2R | 10558157..10558649 | 1838..2330 | 100 | -> | Plus |
| arm_2R | 10555921..10555943 | 17..39 | 100 | -> | Plus |
| arm_2R | 10556004..10556605 | 40..641 | 100 | -> | Plus |
| arm_2R | 10556773..10557023 | 642..892 | 100 | -> | Plus |
| arm_2R | 10557092..10557428 | 893..1229 | 100 | -> | Plus |
| arm_2R | 10557488..10558095 | 1230..1837 | 100 | -> | Plus |
BO30345.pep Sequence
Translation from 16 to 2602
> BO30345.pep
MSRNRRRSFPSSQYEDKTAAAQPSGSSLRSQSLSRLDISVQNSSIYYNDT
RNTRPQMVSVAVGTVSTDILNGRTSFLSLSQSHGSEVDLPSFYESFNPTF
LPKLPIRRFPHMLVGASNEPEISKNQPAIPPSRPIEPISEVPFVEPAFEK
KYSRTRGFSKELSTHRDNENEYIESTDEVSQMLSFTSYTDEYDRAEPLIT
KTQKFYKKRSPLIPKYDSEDSYVVPKETDQQESGLSFNVTTVQLADTASP
ESFSEYDGNRTRKQSFDMESKNSKESFDFSRGGRRLGSGMVFIYMVIPPD
GGFGWVIMVLSFLAQLIIDGLIFTIGVLLPSIAQDLDVSISSVSFVASVQ
IGCYFTSGAFSAVLINRFGFRKVAIAGVLCSAVSILASSWSVSLTMLIFF
YSVLGGITLSMIWASSQLIVGYYFERYRPMANGFSCSGGGAGIVLFTFLN
SWLVPIIGWRNMLRTQAGLIMLILLMVVAYVEVAPTQVGMYHLPGSSDTS
SDEYYGNFYVHDYLRQSAMTAKSRSILSTYEPRPKKKGCAKFCPSCSNCC
WRRRKKSQNADEQNLLIRPAPLEREDLFYTGPAEYEKPHSKENVDGKEFL
LMGSDKNTQQVNYGIKNIRVDDEPDRISRVHRERRWSNENQKKQNSCRNS
RFMLTVLKLFDYRLLKQFEFKILVASAFLFPMGFNIPFVYSSARTTIPVE
YARMIGPIIGISNLVMRNILGILAYKRRSWTLGLCGCGLIFGGVSVLISA
FYGENLIWFQFLYGFSYAVAPAVYSTLRGLIYVKYLGLSKLTNAFGITSL
AMGMGAFIGTTIAGKLIGITGNYSAAFCFAGLCLIVSGFLKLLLPLLIKC
RNRMAQASFLDH
BO30345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-PB | 856 | CG12866-PB | 1..856 | 1..856 | 4416 | 100 | Plus |
| CG12866-PD | 859 | CG12866-PD | 1..859 | 1..856 | 4402 | 99.7 | Plus |
| CG12866-PC | 800 | CG12866-PC | 1..800 | 57..856 | 4137 | 100 | Plus |
| CG12866-PE | 357 | CG12866-PE | 1..293 | 1..293 | 1496 | 99.7 | Plus |
| CG8468-PB | 678 | CG8468-PB | 40..239 | 295..495 | 357 | 35.3 | Plus |
