BO30346.complete Sequence
2326 bp assembled on 2013-09-16
GenBank Submission: KX794215
> BO30346.complete
GAAGTTATCAGTCGACATGTCTAAATACTTTTGTCACCGCCCAAATCGTT
GTCTGTCTAGCTTTCTTATCAGCAGAAGGAAAATTGAAAAGGTAAGCTCC
GTTTTGCTGTACGGAGTGCAGATTGTATCCCTGCACATTGAAGGTCAAGA
GCGCCTTTGCTTGGCGCAAATTTCAAATACATTACTAAAACAATTCAGTT
ACAACGAGATACACAACAGGAGAGTTGCTCTTGGCATTACTTGTGTACAA
TGTACACCCGTGCAATTGGAAATATTGAGAAGAGCTGGCGCCATGCCAGT
GAGTTCCCGACGATGTGGCATGATTACCCGCAGGGAAGCGGAGCGTCTAT
GCAAAAGTTTCTTGGGCGACAATACACCACCACGACTACCTGACGACTTT
GCGTTTAACGTCCAGCACAAATGTGCTTGGGGCTGCCGCGGATCCTTTCT
ACCCTCGCGTTACAACTCATCAAGGGCTAAGTGCATTAAGTGTTCATATT
GCGGAATGTTTTTCTCGCCCAATAAATTTATTTTTCACTCACATCGCATA
ACAACTAATGACAGGTACGTTCAGCCTGATGCAGCGAACTTTAATTCCTG
GCGTCGACACATGTCTCTGAGTGGAAATGATTACGATGAGAAAATAATTC
ATGCATGGGAAGATGTCAAGGCCATGTTTAATGGCGGCACAAGAAAGCGG
CTTGTTGGCAGCAGCATTAACCCTCGAAGTCCTGGCTCACCAACACAATC
CACTGCGGTAAGTTCCGGAGTTGGCAGCAGTTCCTGTGGCTCCCCAACGA
GTTTCGAAAGAGATACCAATGAAGTCGACGGGAAATCGGGGTCCTCGCTC
CCACAACGCTCGCAGATCGACAGCCAGTACAACTACGGAACAGTAGCTGC
AGCCGCTGCTGTAGTTGGAGTAACGGCGGTAGCAGCTGCAACAGTCGGTG
TTCCCTTTAACTTACATGGCTCAACCGTCTTATCACCTTTGCATTCCCTT
CGCAATGAACGTGATCTTTCTATAATGCCAATTTCCAGGAACTTTGTAGT
GGACTACATGTGGCAGCAGAAGGACCAACATTATCAGCAGCCTTACGCAA
GAAAAATCCCTAGCGGCGACAACAGCGACTCTAGCCTAGACTTCGATTCC
TGGGTTAAACCAGACTCAAACAATCCAATACCGAATGCGAATTCAGTTCG
AACTTCGGATAATTGTTCTTTTAATATTAAAAACGAGTCCCATTCCTCAA
TTTATGGCATTATAAAGAACCATAAGCTCTCTGGAGTGCCAAACAGCGGG
CTTAACCTGTCCGATTATAACATTCCTTCCATTCTTAATTGCTCTGCGTT
TAAACCAGTCGTCGCTTCGACAGCGATTGTGTCAACTTCCCTGTACACAA
GATCCAATGAATCAACACGAACTGACTGTAACAACCCAGCACAATCTACA
AGAACCACAACGGTTCTAACGCACAATAGTATTTCAGCCTCTTCCCACCA
GATAGTGGGTCATAAGACTTTTTCGCCAATTTTAGGAAAAATTCATTCTA
ATCCGGAGAAGAATAGAATAGTATCTGTTTTCGCAAGTAGTTCGACTGGA
AATGCAGATGATAATGATGATGACGACGAAGTAGTAGACATCGAAACAAC
TGAAGATGAAGGGAAATTCACAGTTCAACACGCTGACAGCCCCAAAACAC
AATACGACGCTATTAGCGGAAGCGACAGTCCCAGCCGTTCTCCGTCTACA
AGTACAAATATAGATGTAGAGCAAGATGTCGATGTAGATATTATTACAAC
AGACACTGAGGACCAACTAGAGTTAAGTGTCGGCCGGTACTCAACTGAGA
ACACAAGTCATTCCTTATCATTTTTCCAAGCTGAGAAAATACAAATTTCA
GATTTATCTCCCAATACAAAAACGTCGAGCGGCGATAATGAAACTAACAC
TTTAAAGGACGCAAAAGGAATAAATGGAAATTTACAAATTTTAGCTCGAC
GAAAAAGAAACAAACTTCAAAAAGATCGATGTCTTTCCAAGCGAACGGTA
TCAAAATGTGTTAGTGACAAATCGCTTATAAAGGGCTTAGCTGCTAATGA
ATTATCATCCAGCTTGCAAATTCAGCAGCATGTTGCCTTCCCTGTATTTT
TAAAATCACAATTGCACTCTCTTCGTCCGCAACAAGCTCAGCAGGTGGTA
TCCCTGACCACCAACTCTGTGGCGGAGTCCAATAAGTGGAGTTATCCAGT
CGGCAACATTGAACCATTATGTTGTTATCAAACTTCTGGAAATAAAAATA
GTCTAGTCGCAAGCTTTCTAGACCAT
BO30346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fuss-RC | 2295 | CG11093-PC | 1..2292 | 17..2308 | 11460 | 100 | Plus |
| fuss-RD | 2313 | CG11093-PD | 94..2310 | 92..2308 | 11085 | 100 | Plus |
| fuss-RB | 2313 | CG11093-PB | 94..2310 | 92..2308 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fuss-RC | 2597 | CG11093-RC | 269..2560 | 17..2308 | 11460 | 100 | Plus |
| fuss-RD | 3094 | CG11093-RD | 841..3057 | 92..2308 | 11085 | 100 | Plus |
| fuss-RB | 2638 | CG11093-RB | 385..2601 | 92..2308 | 11085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 964172..965641 | 1559..90 | 7350 | 100 | Minus |
| 4 | 1348131 | 4 | 963720..964118 | 1958..1560 | 1995 | 100 | Minus |
| 4 | 1348131 | 4 | 962378..962730 | 2308..1956 | 1765 | 100 | Minus |
| 4 | 1348131 | 4 | 968923..969001 | 95..17 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 803842..803920 | 95..17 | 380 | 98.7 | Minus |
| 2R | 25286936 | 2R | 12318048..12318126 | 95..17 | 365 | 97.5 | Minus |
| 4 | 1348131 | 4 | 221570..221648 | 95..17 | 350 | 96.2 | Minus |
| 4 | 1348131 | 4 | 347503..347581 | 17..95 | 350 | 96.2 | Plus |
| 2R | 25286936 | 2R | 2846106..2846184 | 17..95 | 350 | 96.2 | Plus |
| 2R | 25286936 | 2R | 3169496..3169574 | 17..95 | 350 | 96.2 | Plus |
| 3R | 32079331 | 3R | 4488075..4488151 | 95..19 | 325 | 94.8 | Minus |
| 3L | 28110227 | 3L | 23557593..23557671 | 95..17 | 305 | 92.4 | Minus |
| 3R | 32079331 | 3R | 3584121..3584198 | 18..95 | 300 | 92.3 | Plus |
| 2R | 25286936 | 2R | 1650835..1650905 | 95..25 | 295 | 94.4 | Minus |
| 2R | 25286936 | 2R | 1578493..1578571 | 95..17 | 290 | 91.1 | Minus |
| 3L | 28110227 | 3L | 26711511..26711576 | 95..30 | 270 | 93.9 | Minus |
| 3L | 28110227 | 3L | 26719370..26719435 | 95..30 | 270 | 93.9 | Minus |
| X | 23542271 | X | 22255619..22255675 | 73..17 | 255 | 96.5 | Minus |
| 3R | 32079331 | 3R | 3509890..3509942 | 17..69 | 250 | 98.1 | Plus |
| 2R | 25286936 | 2R | 4710022..4710100 | 95..17 | 245 | 87.3 | Minus |
| X | 23542271 | X | 22925822..22925903 | 17..95 | 225 | 87.8 | Plus |
| 3R | 32079331 | 3R | 4511988..4512045 | 74..17 | 200 | 89.7 | Minus |
Blast to na_te.dros performed 2014-11-28 14:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 144..240 | 97..1 | 386 | 88.7 | Minus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 893..937 | 1617..1661 | 117 | 73.3 | Plus |
BO30346.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:15 Download gff for
BO30346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fuss-RC | 269..2560 | 17..2310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:33 Download gff for
BO30346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fuss-RC | 269..2560 | 17..2310 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:33 Download gff for
BO30346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 962376..962728 | 1958..2310 | 99 | <- | Minus |
| 4 | 963721..964118 | 1560..1957 | 100 | <- | Minus |
| 4 | 964172..965639 | 92..1559 | 100 | <- | Minus |
| 4 | 968927..969001 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:15 Download gff for
BO30346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 983002..983354 | 1958..2310 | 99 | <- | Minus |
| arm_4 | 984347..984744 | 1560..1957 | 100 | <- | Minus |
| arm_4 | 984798..986265 | 92..1559 | 100 | <- | Minus |
| arm_4 | 989553..989627 | 17..91 | 100 | | Minus |
BO30346.pep Sequence
Translation from 16 to 2326
> BO30346.pep
MSKYFCHRPNRCLSSFLISRRKIEKVSSVLLYGVQIVSLHIEGQERLCLA
QISNTLLKQFSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPVSSRRC
GMITRREAERLCKSFLGDNTPPRLPDDFAFNVQHKCAWGCRGSFLPSRYN
SSRAKCIKCSYCGMFFSPNKFIFHSHRITTNDRYVQPDAANFNSWRRHMS
LSGNDYDEKIIHAWEDVKAMFNGGTRKRLVGSSINPRSPGSPTQSTAVSS
GVGSSSCGSPTSFERDTNEVDGKSGSSLPQRSQIDSQYNYGTVAAAAAVV
GVTAVAAATVGVPFNLHGSTVLSPLHSLRNERDLSIMPISRNFVVDYMWQ
QKDQHYQQPYARKIPSGDNSDSSLDFDSWVKPDSNNPIPNANSVRTSDNC
SFNIKNESHSSIYGIIKNHKLSGVPNSGLNLSDYNIPSILNCSAFKPVVA
STAIVSTSLYTRSNESTRTDCNNPAQSTRTTTVLTHNSISASSHQIVGHK
TFSPILGKIHSNPEKNRIVSVFASSSTGNADDNDDDDEVVDIETTEDEGK
FTVQHADSPKTQYDAISGSDSPSRSPSTSTNIDVEQDVDVDIITTDTEDQ
LELSVGRYSTENTSHSLSFFQAEKIQISDLSPNTKTSSGDNETNTLKDAK
GINGNLQILARRKRNKLQKDRCLSKRTVSKCVSDKSLIKGLAANELSSSL
QIQQHVAFPVFLKSQLHSLRPQQAQQVVSLTTNSVAESNKWSYPVGNIEP
LCCYQTSGNKNSLVASFLDH
BO30346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fuss-PC | 764 | CG11093-PC | 1..764 | 1..764 | 3976 | 100 | Plus |
| fuss-PD | 770 | CG11093-PD | 32..770 | 26..764 | 3841 | 100 | Plus |
| fuss-PB | 770 | CG11093-PB | 32..770 | 26..764 | 3841 | 100 | Plus |
| Snoo-PG | 1223 | CG34421-PG | 121..274 | 31..177 | 246 | 37.7 | Plus |
| Snoo-PD | 1223 | CG34421-PD | 121..274 | 31..177 | 246 | 37.7 | Plus |
