BO30347.complete Sequence
2434 bp assembled on 2012-04-24
GenBank Submission: KX796042
> BO30347.complete
GAAGTTATCAGTCGACATGGTCAGTGTGGCCGTCGGCACAGTTTCAACGG
ATATCCTGAATGGGCGCACATCATTCTTGTCCCTTAGTCAGTCTCACGGG
AGTGAAGTGGATTTGCCTTCGTTCTACGAAAGCTTTAATCCAACTTTTCT
TCCCAAGCTGCCTATCAGAAGATTTCCCCATATGCTTGTGGGGGCATCAA
ATGAGCCTGAGATTTCGAAAAACCAGCCAGCAATTCCACCATCTAGGCCA
ATTGAGCCAATATCTGAGGTGCCGTTTGTGGAACCGGCCTTTGAGAAAAA
ATACTCTAGGACCCGTGGATTTAGCAAGGAATTGTCCACACACAGGGATA
ATGAGAATGAATATATCGAGAGCACAGATGAGGTGTCTCAGATGTTGAGC
TTTACTAGCTATACGGATGAATATGATAGGGCAGAACCACTCATTACCAA
AACGCAAAAGTTTTATAAAAAGAGATCCCCCTTGATTCCCAAATACGATT
CCGAGGATTCATATGTGGTCCCTAAGGAAACCGATCAACAGGAATCGGGT
CTCTCGTTCAATGTAACTACAGTACAGTTGGCCGATACCGCATCGCCGGA
ATCTTTCAGCGAATACGACGGAAATCGAACGCGCAAGCAATCGTTCGACA
TGGAAAGTAAAAATTCGAAGGAGTCCTTTGACTTTAGCCGTGGTGGAAGA
CGACTTGGCTCCGGTATGGTTTTTATCTATATGGTGATACCACCGGACGG
CGGATTCGGTTGGGTAATCATGGTGCTGTCCTTCCTCGCCCAGCTGATAA
TCGATGGTTTAATTTTTACCATTGGGGTCTTATTGCCATCCATTGCCCAG
GATCTGGATGTCTCCATATCGTCGGTATCGTTTGTGGCCAGTGTCCAGAT
TGGTTGCTACTTCACTAGCGGAGCGTTTTCTGCTGTCCTGATAAATCGTT
TTGGTTTCCGAAAGGTAGCCATCGCTGGGGTCCTGTGTTCCGCAGTTTCA
ATACTGGCGTCCAGTTGGAGCGTCAGCTTGACCATGCTGATCTTCTTTTA
CAGCGTCCTTGGTGGTATTACGTTGAGCATGATCTGGGCAAGTTCGCAGC
TGATTGTTGGCTACTACTTTGAGCGGTACCGTCCGATGGCCAATGGATTT
TCCTGCAGCGGTGGCGGTGCGGGCATAGTACTCTTCACGTTCCTCAACAG
CTGGCTGGTGCCAATCATCGGATGGAGGAACATGCTGCGGACGCAGGCGG
GGCTGATAATGTTGATCCTGTTGATGGTGGTCGCCTATGTGGAGGTGGCT
CCCACCCAGGTGGGCATGTACCATTTACCCGGTTCTTCGGATACCAGTTC
GGATGAGTATTACGGCAACTTCTACGTGCATGACTATTTACGTCAATCCG
CGATGACTGCTAAAAGCCGGAGTATCCTAAGTACATATGAGCCACGCCCA
AAAAAGAAAGGATGCGCCAAGTTCTGCCCCTCCTGTTCGAACTGTTGTTG
GAGGCGGCGGAAGAAGTCGCAAAATGCTGATGAGCAGAATCTGCTCATCC
GCCCGGCGCCCCTGGAGCGGGAGGATCTCTTCTATACGGGTCCTGCCGAA
TACGAAAAGCCGCACAGCAAGGAGAACGTCGACGGCAAGGAGTTCCTACT
AATGGGATCGGATAAGAACACCCAGCAAGTGAACTATGGCATCAAGAACA
TTCGTGTGGATGATGAACCCGATAGGATTTCTAGAGTTCATAGGGAACGA
AGATGGTCAAACGAGAATCAGAAAAAGCAAAATTCCTGTAGGAATAGCCG
GTTTATGCTCACTGTGCTCAAACTATTCGACTACCGCCTGCTGAAACAGT
TTGAGTTCAAGATTCTGGTGGCGTCCGCCTTTCTGTTCCCGATGGGCTTT
AATATACCCTTTGTTTACTCGTCTGCACGAACCACGATCCCCGTCGAATA
TGCCCGTATGATCGGCCCCATTATCGGAATTAGTAATCTTGTGATGAGAA
ACATCCTTGGCATCCTCGCTTACAAAAGGCGTAGTTGGACCCTCGGACTT
TGTGGTTGTGGTCTAATTTTCGGTGGTGTTTCCGTTTTGATTAGCGCCTT
CTATGGAGAGAACTTGATTTGGTTCCAGTTTCTGTATGGCTTCTCCTATG
CTGTAGCGCCTGCTGTTTATTCCACACTGAGAGGTTTGATATACGTGAAA
TACCTGGGACTTTCAAAACTGACCAACGCTTTTGGGATTACCTCATTGGC
CATGGGAATGGGCGCCTTTATTGGGACTACAATTGCTGGTAAATTGATAG
GCATCACGGGAAACTATTCTGCTGCCTTTTGCTTTGCGGGATTATGTCTC
ATAGTGTCCGGATTTCTGAAGCTTCTGCTGCCCTTGCTTATTAAATGTCG
CAACAGGATGGCCCAAGCAAGCTTTCTAGACCAT
BO30347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RC | 2403 | CG12866-PC | 1..2400 | 17..2416 | 12000 | 100 | Plus |
| CG12866-RB | 2571 | CG12866-PB | 169..2568 | 17..2416 | 12000 | 100 | Plus |
| CG12866-RD | 2580 | CG12866-PD | 169..2577 | 17..2416 | 11875 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-RC | 2809 | CG12866-RC | 197..2596 | 17..2416 | 12000 | 100 | Plus |
| CG12866-RB | 2806 | CG12866-RB | 194..2593 | 17..2416 | 12000 | 100 | Plus |
| CG12866-RE | 2810 | CG12866-RE | 194..2597 | 17..2416 | 11925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14669982..14670590 | 1061..1669 | 3045 | 100 | Plus |
| 2R | 25286936 | 2R | 14670652..14671144 | 1670..2162 | 2465 | 100 | Plus |
| 2R | 25286936 | 2R | 14668644..14669101 | 17..474 | 2290 | 100 | Plus |
| 2R | 25286936 | 2R | 14669587..14669925 | 725..1063 | 1695 | 100 | Plus |
| 2R | 25286936 | 2R | 14671208..14671462 | 2162..2416 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 14669268..14669518 | 474..724 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:43:48 has no hits.
BO30347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:00:27 Download gff for
BO30347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RC | 197..2596 | 17..2418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:41 Download gff for
BO30347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 194..2593 | 17..2418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:58 Download gff for
BO30347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12866-RB | 194..2593 | 17..2418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:58 Download gff for
BO30347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14668644..14669100 | 17..473 | 100 | -> | Plus |
| 2R | 14669268..14669518 | 474..724 | 100 | -> | Plus |
| 2R | 14669587..14669923 | 725..1061 | 100 | -> | Plus |
| 2R | 14669983..14670590 | 1062..1669 | 100 | -> | Plus |
| 2R | 14670652..14671144 | 1670..2162 | 100 | -> | Plus |
| 2R | 14671209..14671462 | 2163..2418 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:41 Download gff for
BO30347.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10556149..10556605 | 17..473 | 100 | -> | Plus |
| arm_2R | 10556773..10557023 | 474..724 | 100 | -> | Plus |
| arm_2R | 10557092..10557428 | 725..1061 | 100 | -> | Plus |
| arm_2R | 10557488..10558095 | 1062..1669 | 100 | -> | Plus |
| arm_2R | 10558157..10558649 | 1670..2162 | 100 | -> | Plus |
| arm_2R | 10558714..10558967 | 2163..2418 | 99 | | Plus |
BO30347.pep Sequence
Translation from 16 to 2434
> BO30347.pep
MVSVAVGTVSTDILNGRTSFLSLSQSHGSEVDLPSFYESFNPTFLPKLPI
RRFPHMLVGASNEPEISKNQPAIPPSRPIEPISEVPFVEPAFEKKYSRTR
GFSKELSTHRDNENEYIESTDEVSQMLSFTSYTDEYDRAEPLITKTQKFY
KKRSPLIPKYDSEDSYVVPKETDQQESGLSFNVTTVQLADTASPESFSEY
DGNRTRKQSFDMESKNSKESFDFSRGGRRLGSGMVFIYMVIPPDGGFGWV
IMVLSFLAQLIIDGLIFTIGVLLPSIAQDLDVSISSVSFVASVQIGCYFT
SGAFSAVLINRFGFRKVAIAGVLCSAVSILASSWSVSLTMLIFFYSVLGG
ITLSMIWASSQLIVGYYFERYRPMANGFSCSGGGAGIVLFTFLNSWLVPI
IGWRNMLRTQAGLIMLILLMVVAYVEVAPTQVGMYHLPGSSDTSSDEYYG
NFYVHDYLRQSAMTAKSRSILSTYEPRPKKKGCAKFCPSCSNCCWRRRKK
SQNADEQNLLIRPAPLEREDLFYTGPAEYEKPHSKENVDGKEFLLMGSDK
NTQQVNYGIKNIRVDDEPDRISRVHRERRWSNENQKKQNSCRNSRFMLTV
LKLFDYRLLKQFEFKILVASAFLFPMGFNIPFVYSSARTTIPVEYARMIG
PIIGISNLVMRNILGILAYKRRSWTLGLCGCGLIFGGVSVLISAFYGENL
IWFQFLYGFSYAVAPAVYSTLRGLIYVKYLGLSKLTNAFGITSLAMGMGA
FIGTTIAGKLIGITGNYSAAFCFAGLCLIVSGFLKLLLPLLIKCRNRMAQ
ASFLDH
BO30347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12866-PC | 800 | CG12866-PC | 1..800 | 1..800 | 4137 | 100 | Plus |
| CG12866-PB | 856 | CG12866-PB | 57..856 | 1..800 | 4137 | 100 | Plus |
| CG12866-PD | 859 | CG12866-PD | 57..859 | 1..800 | 4123 | 99.6 | Plus |
| CG12866-PE | 357 | CG12866-PE | 57..293 | 1..237 | 1217 | 99.6 | Plus |
| CG8468-PB | 678 | CG8468-PB | 40..239 | 239..439 | 357 | 35.3 | Plus |
