BO30350.complete Sequence
1669 bp assembled on 2011-10-20
GenBank Submission: KX795381
> BO30350.complete
GAAGTTATCAGTCGACATGGCTGAAATGGAAGTAAAACAAAAACTATTGA
ACGCGATGTGCACTTATGATGATAAACTCAAGATCTGGAGTGGTCGTGAA
GCACCAAGTTTATTTTCGCCAAACTTATCAATCGGAGAGATAATCTTTGG
GGATATGGTAAACAATCCGAAACTCATTGCCCAGATCTCGATCACGGAGG
ACATCGTACTCACCCGCGAAGATCTTCATATGAATGCGATGCGAGTGGCT
AGTTATATGAGGAATATGGGCTTGGGGCAAACTGATATAGTGGGGGTCAT
GGGCAGACACACGACTCACCAATCAGCTGTGGCATATGCATGCTTCTTCA
ACGGAACCCCCTTACACGCCCTTCACAATGCCTACGAAGAGGCATGCATC
GCCAAACTTTTTGGAATCACAAAGCCCCGCTTGATCTTCTGCGATGGTGA
TGAGTATGAAAAGGTTAAATCGGCCACCAAGGACCTCCAGGTAACGATAG
TCACCATGCGGAATCATCCGAGGGGATCAGTGAGGATCCAGGATGTTCTG
ACCACTCCAGTGATGCAGAATTTCCAACCACTTCGTCTCAAAGATGGCAT
CGATCACACTCTGGCCATTCTCAGTTCTTCCGGCACCTCGGGATTTCCAA
AGGCAGTTACCATCAGCAATAGTCACAAGATCATTGTGGACTACATGGCA
ATTAATAACTCCAATATTCAGTATACGTCGAGCACCCTGGACTGGTGCTC
GGGTCTTTCGATGGCCATAACCTCTGGCGTGTTCAGTACCACTAGTATTA
TAGCGGACTGTGACTTTGATCCTGGGCTATTTTGTCGCGCCATTGGAAAG
TATAGGATCTCGATGGTGCTTCTAAGTAGCTCCTACCTAGCCATATTTGC
CAACTGCCCAGAGTTCGAATCGGCTGACCTGTCTTCATTAAATTACGTGA
TTTTTGGAGGATCAAGCTGTTCTCTGGAAGTTCAGCGTAAAGTTCGCAGC
CGTCTTAGCCACGATTGCCTAAATTTTTGCTACGGCCTAACTGAGCTCAA
CAGTGCGGGCAGCGTTAACTTAAATTTCGATGAGAAACCCAATTCAGTGG
GTCGTGCGATTAGGGGTATAAAAATCAAGGTAATCGACGAGCAGGGTGAA
GCTCAGGAACCCAATGTCGTGGGAGAGATATGCTTCCACAATAGCCAAAA
ATGGGCTGGTTACTACAAAAATCCCGATGAAACCAGGCAAATTCAAGACT
CTGAGAACTGGATTCACACAGGGGACTTGGGCTATGTGGATAAGGATGGT
TATCTATTTGTTATCGATCGCCTAAAGGATATGCTGAAGTATCAGAACAT
AATGTATTATCCCAGTGAGATTGAGAATGTCATCGCCGAAATGCCAAATG
TGCTCGAGGCTTGTGTGTTCGGCATTTGGGATCCAGTAAATGGAGATGAG
GCAGCAGCATCGTTGGTCAAGAAGCCGGGTACCCAACTGGAAGCGCAGGA
TGTGGTGGAGTACGTAAGGAAGCGCATAACTGCCAAGTTTAAGCAGCTAA
ATGGAGGAGCATTAATTGTAGATCAAATCGTTCGAAGTGGTAACAGAAAA
ACCAACAGATCGGCTGTCAAAGAGCACTTTTTAAAAAATTATAACAATAA
CGCAAGCTTTCTAGACCAT
BO30350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18586-RB | 1638 | CG18586-PB | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| CG18586-RC | 1611 | CG18586-PC | 141..1608 | 184..1651 | 7340 | 100 | Plus |
| CG5568-RA | 1638 | CG5568-PA | 51..1598 | 67..1614 | 1725 | 74.1 | Plus |
| CG18586-RC | 1611 | CG18586-PC | 1..141 | 17..157 | 705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18586-RB | 1817 | CG18586-RB | 102..1736 | 17..1651 | 8175 | 100 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 463..1930 | 184..1651 | 7340 | 100 | Plus |
| CG5568-RA | 1911 | CG5568-RA | 148..1695 | 67..1614 | 1725 | 74.1 | Plus |
| CG18586-RC | 2020 | CG18586-RC | 323..463 | 17..157 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5874422..5875376 | 697..1651 | 4775 | 100 | Plus |
| 3L | 28110227 | 3L | 5873854..5874370 | 181..697 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 5872479..5873302 | 791..1614 | 1375 | 77.8 | Plus |
| 3L | 28110227 | 3L | 5873633..5873800 | 17..184 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 5871882..5872323 | 245..686 | 470 | 73.8 | Plus |
| 3R | 32079331 | 3R | 19782634..19782859 | 1256..1481 | 200 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:23:51 has no hits.
BO30350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-20 16:34:18 Download gff for
BO30350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1736 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:40 Download gff for
BO30350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1736 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:46 Download gff for
BO30350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18586-RB | 102..1736 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:46 Download gff for
BO30350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5873633..5873800 | 17..184 | 100 | -> | Plus |
| 3L | 5873858..5874369 | 185..696 | 100 | -> | Plus |
| 3L | 5874422..5875376 | 697..1653 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:40 Download gff for
BO30350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5866733..5866900 | 17..184 | 100 | -> | Plus |
| arm_3L | 5866958..5867469 | 185..696 | 100 | -> | Plus |
| arm_3L | 5867522..5868476 | 697..1653 | 99 | | Plus |
BO30350.pep Sequence
Translation from 16 to 1669
> BO30350.pep
MAEMEVKQKLLNAMCTYDDKLKIWSGREAPSLFSPNLSIGEIIFGDMVNN
PKLIAQISITEDIVLTREDLHMNAMRVASYMRNMGLGQTDIVGVMGRHTT
HQSAVAYACFFNGTPLHALHNAYEEACIAKLFGITKPRLIFCDGDEYEKV
KSATKDLQVTIVTMRNHPRGSVRIQDVLTTPVMQNFQPLRLKDGIDHTLA
ILSSSGTSGFPKAVTISNSHKIIVDYMAINNSNIQYTSSTLDWCSGLSMA
ITSGVFSTTSIIADCDFDPGLFCRAIGKYRISMVLLSSSYLAIFANCPEF
ESADLSSLNYVIFGGSSCSLEVQRKVRSRLSHDCLNFCYGLTELNSAGSV
NLNFDEKPNSVGRAIRGIKIKVIDEQGEAQEPNVVGEICFHNSQKWAGYY
KNPDETRQIQDSENWIHTGDLGYVDKDGYLFVIDRLKDMLKYQNIMYYPS
EIENVIAEMPNVLEACVFGIWDPVNGDEAAASLVKKPGTQLEAQDVVEYV
RKRITAKFKQLNGGALIVDQIVRSGNRKTNRSAVKEHFLKNYNNNASFLD
H
BO30350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18586-PB | 545 | CG18586-PB | 1..545 | 1..545 | 2840 | 100 | Plus |
| CG18586-PC | 536 | CG18586-PC | 1..536 | 1..545 | 2775 | 98.3 | Plus |
| CG5568-PA | 545 | CG5568-PA | 1..545 | 1..545 | 2016 | 69.7 | Plus |
| CG11407-PA | 538 | CG11407-PA | 9..532 | 17..540 | 1665 | 58.2 | Plus |
| CG6300-PA | 537 | CG6300-PA | 8..537 | 16..545 | 1608 | 56.2 | Plus |
