BO30354.complete Sequence
4009 bp assembled on 2011-11-14
GenBank Submission: KX796748
> BO30354.complete
GAAGTTATCAGTCGACATGGGCAAGGATCAGGAGTTCCTGGAGGCGGCGC
GCAATGGAAACATTTCGCACATCGAAAAGGTGCTAACACAGAAGGCGAAA
AGGGCAGGACCGCTGGCCAGTCTGCGTCGTGGCACCGGGGTAAATGTCCA
GGACAGTGGTGGCTACTCCGCCCTGCATCATGCCTGCCTGAATGGCCATG
AGGATATAGTGCGTCTGTTGCTGGCACACGAGGCCTCGCCAAATTTGCCG
GACTCCCGGGGATCCTCGCCACTCCACTTGGCCGCCTGGGCTGGTGAAAC
GGAGATTGTGCGGCTCCTGCTGACGCATCCGTATCGACCGGCCAGTGCCA
ATCTGCAGACAATAGAGCAGGAGACACCACTGCATTGTGCGGCTCAACAT
GGTCACACGGGAGCACTTGCCCTGCTGTTGCATCACGATGCCGATCCCAA
CATGCGCAATTCCCGGGGAGAAACCCCTCTGGATTTGGCCGCACAATATG
GCCGATTGCAGGCGGTTCAAATGCTTATACGTGCCCATCCGGAATTGATA
GCACATCTGGGCACCGAGGCCTTGGAACGGGGCACACCATCACCATCGTC
GCCAGCATCGCCGAGTAGAGCCATCTTTCCGCACACCTGTCTGCATTTGG
CCAGTCGCAATGGGCACAAAAGCGTGGTGGAGGTCCTATTGTCCGCCGGA
GTTAGTGTCAATTTGCTAACTCCATCGGGAACTGCACTGCATGAAGCAGC
TCTGTGTGGCAAGGAGAATGTGGTCAGGACACTATTGAAAGCTGGCATCA
ATTTGAATGCCACAGACAATGAAGGACGCACTGCCCTGGACATTCTGCGC
GAATTTCCACCGCATGTCACCAAACACATTGTGGCTGTGATCAACAACTT
CCGTAACCAAATGGATACAGATGAGGGCGACGAGGTGATCTACAGGCAAC
ACTCCGGACCACCCAATTCCGGACGTGGCCAAAACAAGCACCATTCGCAA
CAACAGCCCCCACTTAGCAATCACTACCATTTCAACTCCAACAATCACTT
GCTGAATCATTCGCACTCCATGCAGCAATCCGGATACAGTAAACAGCGCC
TGAGTGCCGGAAACGGTGGACCCTACAACGGAGGCAAGTCCTTGGACAGT
GCCCTCCAGCCGGAGGATCGTTTCTACCAGGATCTCAACGCACACTCCCC
ACTGCATAGTCAAAATGAAATGGGTGGTGGCTACAGTGTGAGTCCCTCCT
CATCGCTGAGCAGCTTTGAGCCGGCCTCCGTTTCGCCACGATCCCGCTGC
TCCACTGGTGGCCTTGGCCAACCCATGCATATGAGCACATTTGCACCGGC
TGGTCCTCCAAAGAAGCCACCAAGACGCAACCTTTCCGTTTCGCCAACTC
ACGCAGGACCTGGCCAGCAGTTTAGCTATAGCTCCCCATCCAGTCAGAGC
CAAAGTCAGAGTCATGGCCATGGTCAAAACCAGGTGCGCCGCCAGCCGGC
CAGCGAAAGTCCCTACTCCCATCAGAGCCATGGAAGTGTTGGCGGTATGA
GTTTCGATGAGACTCAGTTGAGGGAGCGCCAACGGAATGATCGTCTTTAT
GCAAGTGCCAGGCAGAGCACAAGATCCGCCATCGCCGGCGGAATGAGCCT
AAGTTCAAGCAATGACATGCTGGACCGGCAGTGCAGCAGCTCGGAACTGA
ATAGCGAGACAAGTGTGCCCAATTCGAGTGGGGATTCCCCGGCTACCAAC
TCCATGAAGCGACCTATTCCAGCTCCTCGAAGTTCAACCACCAAGCTGTC
CAAGGAGCTCCTCAAATCAGCTGAAAGTGCTACCCTCAAGTCCTATAATC
CCAATCGAAAACTTAAACGGAATCGGAACAGCAGTGGTGCAAATGGGGCA
GCAAAATCCAACGGTGGTGACGAGAATTGCGAGGCCAAGCAGCAGATACC
CAGTAGCCCCACACACTACAAGCAGCCACCCACGCCGGATCATCCGCCGC
CGAGCTCCAGCCAGGCGGAACGGACCATCCATGAACGGATTAGGCCACTT
AGCCAGGAGTACAAGCGCAGATCCGCTCTGCTCCAGCTCCAGGCAGCTCA
GCAACTCATGATCGAAACGGGCTCATCACCTTCGAAACTGTTGCCCACGT
TAAGTACTCCTGGCTACGATTACGATGATACGGTTACGGTGGTACCCCGC
TGTCCGGCTCCATCCTCCGGATCGCTGAGTTCCAGCATTTCGTGCTCGGA
TCACAGTCTATCCCATTCCACGGACTATGTGGAGGAGTTTGTCAGCGATG
TACCCTTTGCCGGTCTATTGAAAGGAGCCTCCCAGCAGCTTAAAGAGCAG
CCCGAGGTGAAGTTAAAAATCCAGGAGGAGAGCAAGCCGCAACAAACTTT
ACCAAGAGTGCGTCCTCCCATTCCCACCAAGCCAGCGATTCCGGAAAAGA
AGTTCGCCAAACCGCCAACAACGCCAACCAATCAATCGCTGGAGGCCAAT
GGAAATTCCTCAAGCGATGTAGTAATCAAACCTCCACGATCACCTTCCAA
GTCACCGAGCAAAACCTCCAACAAATCTCCAGTCAAGTCACCAGGTAAAT
CGCCAGCAAAATCACCAGGAAGTGGTCACTCGGCAGCAAGGAATTCCATA
AATCTCCTCAGTCCCTTTAATGCGGAAGAGGCGCGCAAGAAGATCTCTGA
GATTATCGAGAACTTTGGCAGCGGCATCCTCAACACCAGCATTACGCCCA
CCCATGATATCGAACTGGACTTTGAGGACATGGAGGTGCCCAACGAACGA
AGGGAATTGGCCACACGTCTCCGCGCTGCAGGATTACTTCATCTGGAGCG
GATACTGTTCGAGAATGGTTATGATAACTACAAGTTTGTGAACAATGTCT
TTGAGGAGCCGGACATTCCGCTACTCCACATTCCCGAACGAGATGCCCCC
AAACTCCTGCGCTTCGTACAGAGTCTTCCACCGGCAGAATTCCAACCGCA
GGTGCCAGTCAAGACGCAGCAGGAGAACAAGCAAATGGGTGTGGCCACCC
TACAGCAGTGGCTCAACACCATTGCACTGCCGGAGTACCTGGAGTTTTTC
AATAAGCATCTCTACAACACAATTGAGAGCGTGTGCGGAGTGTGGGATGT
GGAGCTCCAAACGGTGCTGGAAATCAACAAGCTGGGCCACCGGAGACGCA
TCCTGCAATCGCTGGCCTATATCCGCCAGATGCGCGACAGTGACTCCAAG
TCGCAAAAAACGCCGCTGGGCGAGAACAATGAAACCAATCAGCTGACAAC
GAATGGCAATGGAACTGCTAGGGAGGCTCCACCCCGGTTACCCGCAAATC
CCGTACATCATCGCAACTCGATCACTGGCTATCGCAAGAGTCGACCCGCT
CCACCACCGCCGGCACCACCAGCTAGAAAGACAGCCGCTCTGCAAATACG
GGCTCCTTCGGAGCTACTGCTGGGTCTACCGGCCAATCTTAGGACCACCG
AATGGCGCCACTCGGCGCAGACTTTGCTCAACGAGCACATCAATTACGAG
GTTCAATACCTCGGCTCAACGGTTGTGAAAGAACTACGTGGCACAGAGTC
CACCAAGAAGTCCATACAAAAACTGAAGACCTCAGCTGATGGTGAAGTCA
AATCGGGGTCACCACTCTCGCTGGCAATTTGTCACCGTGGCGTAGAGTTC
AAGGACGTGAACAGTAAGCGCACCATTTGCGAGCACGAGATTCAGAACAT
CAATTGCGCCTGCCAGGACTCGGAGGACTTGAGGCACTTTGCCTACATAA
CCAAGGAGCAGGATCTGCACTACTGCCACGTTTTCCTGGTCGAAAGCACT
GACCTGGCCAGCGAGATCATTCTGACACTGGGACAGGCCTTCGAGGTGGC
CTATCAACTGGCACTACGCGATGGAATCACGACCACGCCAGAACTGCTGC
TGGACAATGGAATGCTGCAGGGCGAGTATTGTGGCGGGAAAGCAAGCTTT
CTAGACCAT
BO30354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4393-RD | 3978 | CG4393-PD | 1..3975 | 17..3991 | 19875 | 100 | Plus |
| CG4393-RC | 3978 | CG4393-PC | 1..3975 | 17..3991 | 19875 | 100 | Plus |
| CG4393-RB | 3978 | CG4393-PB | 1..3975 | 17..3991 | 19875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4393-RD | 5931 | CG4393-RD | 293..4267 | 17..3991 | 19875 | 100 | Plus |
| CG4393-RC | 4515 | CG4393-RC | 160..4134 | 17..3991 | 19875 | 100 | Plus |
| CG4393-RB | 4648 | CG4393-RB | 293..4267 | 17..3991 | 19875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23379141..23380149 | 2890..1882 | 5045 | 100 | Minus |
| 3R | 32079331 | 3R | 23381654..23382533 | 896..17 | 4400 | 100 | Minus |
| 3R | 32079331 | 3R | 23380536..23380981 | 1661..1216 | 2230 | 100 | Minus |
| 3R | 32079331 | 3R | 23381042..23381360 | 1215..897 | 1595 | 100 | Minus |
| 3R | 32079331 | 3R | 23378503..23378793 | 3393..3103 | 1455 | 100 | Minus |
| 3R | 32079331 | 3R | 23380259..23380481 | 1884..1662 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 23378863..23379075 | 3102..2890 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 23378271..23378434 | 3556..3393 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 23377989..23378150 | 3718..3557 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 23377592..23377732 | 3991..3851 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 23377794..23377928 | 3851..3717 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 24921919..24922026 | 3740..3847 | 270 | 83.3 | Plus |
Blast to na_te.dros performed 2014-11-28 07:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3250..3343 | 3840..3933 | 119 | 58.5 | Plus |
BO30354.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-14 09:53:50 Download gff for
BO30354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4393-RB | 293..4267 | 17..3993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:17 Download gff for
BO30354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4393-RB | 293..4267 | 17..3993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:16 Download gff for
BO30354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4393-RB | 293..4267 | 17..3993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:16 Download gff for
BO30354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23377590..23377732 | 3851..3993 | 98 | <- | Minus |
| 3R | 23377795..23377926 | 3719..3850 | 100 | <- | Minus |
| 3R | 23377989..23378150 | 3557..3718 | 100 | <- | Minus |
| 3R | 23378271..23378433 | 3394..3556 | 100 | <- | Minus |
| 3R | 23378503..23378793 | 3103..3393 | 100 | <- | Minus |
| 3R | 23378863..23379074 | 2891..3102 | 100 | <- | Minus |
| 3R | 23379141..23380146 | 1885..2890 | 100 | <- | Minus |
| 3R | 23380259..23380481 | 1662..1884 | 100 | <- | Minus |
| 3R | 23380536..23380981 | 1216..1661 | 100 | <- | Minus |
| 3R | 23381042..23381360 | 897..1215 | 100 | <- | Minus |
| 3R | 23381654..23382533 | 17..896 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:17 Download gff for
BO30354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19203517..19203648 | 3719..3850 | 100 | <- | Minus |
| arm_3R | 19203711..19203872 | 3557..3718 | 100 | <- | Minus |
| arm_3R | 19203993..19204155 | 3394..3556 | 100 | <- | Minus |
| arm_3R | 19204225..19204515 | 3103..3393 | 100 | <- | Minus |
| arm_3R | 19203312..19203454 | 3851..3993 | 98 | <- | Minus |
| arm_3R | 19204585..19204796 | 2891..3102 | 100 | <- | Minus |
| arm_3R | 19204863..19205868 | 1885..2890 | 100 | <- | Minus |
| arm_3R | 19205981..19206203 | 1662..1884 | 100 | <- | Minus |
| arm_3R | 19206258..19206703 | 1216..1661 | 100 | <- | Minus |
| arm_3R | 19206764..19207082 | 897..1215 | 100 | <- | Minus |
| arm_3R | 19207376..19208255 | 17..896 | 100 | | Minus |
BO30354.pep Sequence
Translation from 16 to 4009
> BO30354.pep
MGKDQEFLEAARNGNISHIEKVLTQKAKRAGPLASLRRGTGVNVQDSGGY
SALHHACLNGHEDIVRLLLAHEASPNLPDSRGSSPLHLAAWAGETEIVRL
LLTHPYRPASANLQTIEQETPLHCAAQHGHTGALALLLHHDADPNMRNSR
GETPLDLAAQYGRLQAVQMLIRAHPELIAHLGTEALERGTPSPSSPASPS
RAIFPHTCLHLASRNGHKSVVEVLLSAGVSVNLLTPSGTALHEAALCGKE
NVVRTLLKAGINLNATDNEGRTALDILREFPPHVTKHIVAVINNFRNQMD
TDEGDEVIYRQHSGPPNSGRGQNKHHSQQQPPLSNHYHFNSNNHLLNHSH
SMQQSGYSKQRLSAGNGGPYNGGKSLDSALQPEDRFYQDLNAHSPLHSQN
EMGGGYSVSPSSSLSSFEPASVSPRSRCSTGGLGQPMHMSTFAPAGPPKK
PPRRNLSVSPTHAGPGQQFSYSSPSSQSQSQSHGHGQNQVRRQPASESPY
SHQSHGSVGGMSFDETQLRERQRNDRLYASARQSTRSAIAGGMSLSSSND
MLDRQCSSSELNSETSVPNSSGDSPATNSMKRPIPAPRSSTTKLSKELLK
SAESATLKSYNPNRKLKRNRNSSGANGAAKSNGGDENCEAKQQIPSSPTH
YKQPPTPDHPPPSSSQAERTIHERIRPLSQEYKRRSALLQLQAAQQLMIE
TGSSPSKLLPTLSTPGYDYDDTVTVVPRCPAPSSGSLSSSISCSDHSLSH
STDYVEEFVSDVPFAGLLKGASQQLKEQPEVKLKIQEESKPQQTLPRVRP
PIPTKPAIPEKKFAKPPTTPTNQSLEANGNSSSDVVIKPPRSPSKSPSKT
SNKSPVKSPGKSPAKSPGSGHSAARNSINLLSPFNAEEARKKISEIIENF
GSGILNTSITPTHDIELDFEDMEVPNERRELATRLRAAGLLHLERILFEN
GYDNYKFVNNVFEEPDIPLLHIPERDAPKLLRFVQSLPPAEFQPQVPVKT
QQENKQMGVATLQQWLNTIALPEYLEFFNKHLYNTIESVCGVWDVELQTV
LEINKLGHRRRILQSLAYIRQMRDSDSKSQKTPLGENNETNQLTTNGNGT
AREAPPRLPANPVHHRNSITGYRKSRPAPPPPAPPARKTAALQIRAPSEL
LLGLPANLRTTEWRHSAQTLLNEHINYEVQYLGSTVVKELRGTESTKKSI
QKLKTSADGEVKSGSPLSLAICHRGVEFKDVNSKRTICEHEIQNINCACQ
DSEDLRHFAYITKEQDLHYCHVFLVESTDLASEIILTLGQAFEVAYQLAL
RDGITTTPELLLDNGMLQGEYCGGKASFLDH
BO30354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4393-PD | 1325 | CG4393-PD | 1..1325 | 1..1325 | 6902 | 100 | Plus |
| CG4393-PC | 1325 | CG4393-PC | 1..1325 | 1..1325 | 6902 | 100 | Plus |
| CG4393-PB | 1325 | CG4393-PB | 1..1325 | 1..1325 | 6902 | 100 | Plus |
| CG11168-PD | 863 | CG11168-PD | 1..346 | 1..351 | 873 | 52.7 | Plus |
| CG11168-PC | 332 | CG11168-PC | 1..292 | 1..295 | 872 | 59.3 | Plus |
