BO30360.complete Sequence
1621 bp assembled on 2013-09-16
GenBank Submission: KX799919
> BO30360.complete
GAAGTTATCAGTCGACATGTTCAAACTGGAGTCCTACATCACTCCGATTC
TGCTGAGCTACGTGGCCAAGTACGTGAAGAACTTCCGCGACGAGGATGCC
CAAGTGTCGCTGTGGGAAGGCGAGGTCACCTTCCAGAATCTGGACCTGCG
CCTGGAGGTGCTCGAGGAAGAGCTGAACCTCCCAGTAGAACTAGTTTCCG
GCCACATTCATGAACTCAGCATCCTGGTGCCGTGGACCAAGCTTATGTCC
GAGCCCGTGAAGATCGTCATCAATACCATAGAATTCGTGGCCAAGTTGCC
GGATAGTGAGAGCAAGCAGCGCAGGGCCTCCTTCCAGCGGGAGCAGCGAA
GGAAATCGAAGCGGGAGTCCGTGGAGCAGCCGGATCAGACGAAGAGTCCT
GGACCGGCAAGCTCTTCCAGCGTGGTCAACAAAATCATCAACAACATCAA
CCTGCAGTGCCACAACATCATCCTGAAGTATGTGGAGGACGACATCGTGG
TCTCTATGAATGTGCAGACCCTTAACTTTAGCTCCGCCGGCGAGGACTGG
AAGCCCACTATGGTGGACATACACCCGGTGTCCGTCGTCATGCGCAAGTT
GCTCCAGGTCTCAGATTTGACCATCTGCTTGGACAAGCGCAACACAGCTG
GTAGGATAGAGGTGTGCCAGGAGCCGGTTCTCTACCGATGTACTCTGGAG
TGCCGGGTTCTCCGCAAGTACAACGCCAACACGGTGTCCACAACAAGCAC
AACACGCATTGGAGTTTTCACGAAGTCGCTGGATATCAACGTGTCATCTC
TGCAGTTCCCCATGGTGATGAGGCTGGTCAAAATGCTGCTCGAGCTTAAG
CCAGCCGAGTTTGAGGATGACCCCCAGAATCCAGAAGATCAGGAGGCGGT
AGCTGAGGGCAGCGAGTCGCAACAGGGGACCGAATCCGCAGGACGAAGCG
TCTTTTGGTGGGCCTGGAGCCTACTGCCCAGTTTCGATACTGAGGCGCCT
TCCTCGTCCTGCGACACTCCCACTGGTCACGCCTTCGATCTGGGAGTCTA
CGCCGAGGAGCTGAACTTCCAGCTTAAAAACTCGGAGTACTTTACCGACC
AGAGCATGGGTGGCATCAAGCGAATACGATACACCCCAATATTGCGAATT
AGTTTGGGCGGACTTTATTACGAGCGGACAATTCTAAAGGAGTGCGACTG
GGCCAACGTCAAGGCGGGCCTTTCTAGCATGTGCATGGAGCCATTAGGTG
CTTACCGTAGCGACGATCTCGTGGATCGCAACTTGGTCAATACCCAGGAA
TTTCAGCAAGAGCGATCCTTTATTGACAAGAGTCTGTTTGACGAGAACTA
CATGTTCGCCGAACGGTCCTGGTGCAGCTACAACTACGCGGATTACGTGG
CCAGGAACACGGATGAATACATGCTGTTTCGCAGTCCTGTTTTGGCCTTC
GACGTCATCGAGCACCGGGTGCCTAAGCCCAGCAGCCATCCCGTGGCGGA
GAGCCAGCTCAGAGATCTGGGAGTTCGCATCCAGTATCGTCTATTGTCCG
CCGGAATCACGTTCCACTTTTCGCAGTCGTTCGTCCAGGTTAAAAAGAAT
CGAGCAAGCTTTCTAGACCAT
BO30360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15523-RB | 1590 | CG15523-PB | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| CG15523-RA | 11196 | CG15523-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15523-RB | 2309 | CG15523-RB | 196..1783 | 16..1603 | 7940 | 100 | Plus |
| CG15523-RA | 11469 | CG15523-RA | 196..1777 | 16..1597 | 7910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29936173..29937457 | 16..1300 | 6425 | 100 | Plus |
| 3R | 32079331 | 3R | 29937515..29937811 | 1301..1597 | 1485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6486..6531 | 378..423 | 113 | 71.7 | Plus |
BO30360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:20 Download gff for
BO30360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15523-RB | 202..1783 | 22..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:38 Download gff for
BO30360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15523-RB | 202..1783 | 22..1605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:38 Download gff for
BO30360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29936179..29937457 | 22..1300 | 100 | -> | Plus |
| 3R | 29937515..29937819 | 1301..1604 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:20 Download gff for
BO30360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25761901..25763179 | 22..1300 | 100 | -> | Plus |
| arm_3R | 25763237..25763541 | 1301..1604 | 98 | | Plus |
BO30360.pep Sequence
Translation from 16 to 1621
> BO30360.pep
MFKLESYITPILLSYVAKYVKNFRDEDAQVSLWEGEVTFQNLDLRLEVLE
EELNLPVELVSGHIHELSILVPWTKLMSEPVKIVINTIEFVAKLPDSESK
QRRASFQREQRRKSKRESVEQPDQTKSPGPASSSSVVNKIINNINLQCHN
IILKYVEDDIVVSMNVQTLNFSSAGEDWKPTMVDIHPVSVVMRKLLQVSD
LTICLDKRNTAGRIEVCQEPVLYRCTLECRVLRKYNANTVSTTSTTRIGV
FTKSLDINVSSLQFPMVMRLVKMLLELKPAEFEDDPQNPEDQEAVAEGSE
SQQGTESAGRSVFWWAWSLLPSFDTEAPSSSCDTPTGHAFDLGVYAEELN
FQLKNSEYFTDQSMGGIKRIRYTPILRISLGGLYYERTILKECDWANVKA
GLSSMCMEPLGAYRSDDLVDRNLVNTQEFQQERSFIDKSLFDENYMFAER
SWCSYNYADYVARNTDEYMLFRSPVLAFDVIEHRVPKPSSHPVAESQLRD
LGVRIQYRLLSAGITFHFSQSFVQVKKNRASFLDH
BO30360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15523-PB | 529 | CG15523-PB | 1..529 | 1..529 | 2733 | 100 | Plus |
| CG15523-PA | 3731 | CG15523-PA | 1..527 | 1..527 | 2722 | 100 | Plus |
| Vps13-PB | 3321 | CG2093-PB | 4..160 | 5..155 | 177 | 25.6 | Plus |
| Vps13-PA | 3321 | CG2093-PA | 4..160 | 5..155 | 177 | 25.6 | Plus |
