BO30362.complete Sequence
688 bp assembled on 2011-09-22
GenBank Submission: KX799175
> BO30362.complete
GAAGTTATCAGTCGACATGAACGATGACGCCCGATCGCCGGGCGCTGGTA
GTACTCCCGGTCCACTGTCACAGCAGCCACCTGCCCTAGATACATCAGAC
CCTGATGGACGATGGTGTCGAAGAGAATGGTCCTCACCTGCCGATGCTCG
CAATGCAGACGCTTCCCGGCGATTGTATTCCTCAGTCTTCCTCGGTAGTC
CTGACAATTTCGGAACGAGTGCAAGCGGTGATGCCAGCAATGCCAGCATA
GGAAGTGGAGAGGGCACCGGCGAGGAGGACGACGATGCGAGCGGCAAAAA
GAACCAAAAGAAACGTGGCATTTTCCCAAAAGTAGCAACCAACATATTGA
GAGCGTGGCTGTTTCAGCATTTAACGCATCCCTACCCATCCGAGGACCAG
AAGAAACAATTGGCCCAGGACACCGGCCTAACGATACTGCAAGTGAATAA
TTGGTTCATCAATGCGCGGCGGAGAATTGTCCAGCCAATGATCGATCAAT
CGAATCGTGCAGTCTATACACCGCATCCAGGTCCCTCCGGATATGGCCAC
GACGCCATGGGCTACATGATGGACAGCCAGGCGCATATGATGCACCGTCC
GCCCGGAGATCCGGGCTTCCACCAGGGCTATCCGCATTACCCGCCCGCCG
AGTACTACGGCCAGCACTTGGCAAGCTTTCTAGACCAT
BO30362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 1419 | CG17117-PA | 763..1416 | 17..670 | 3270 | 100 | Plus |
| hth-RC | 1464 | CG17117-PC | 894..1461 | 103..670 | 2840 | 100 | Plus |
| hth-RC | 1464 | CG17117-PC | 763..854 | 17..108 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 4226 | CG17117-RA | 2040..2693 | 17..670 | 3270 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2171..2738 | 103..670 | 2840 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2040..2131 | 17..108 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10511380..10511540 | 670..510 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 10521072..10521221 | 376..227 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 10533911..10534007 | 203..107 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 10561909..10561996 | 104..17 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 10514266..10514345 | 455..376 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 10511759..10511818 | 512..453 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:04 has no hits.
BO30362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:20 Download gff for
BO30362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RG | 417..1070 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:13 Download gff for
BO30362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2040..2693 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:05 Download gff for
BO30362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2040..2693 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:05 Download gff for
BO30362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10511378..10511537 | 513..672 | 98 | <- | Minus |
| 3R | 10511759..10511817 | 454..512 | 100 | <- | Minus |
| 3R | 10514268..10514344 | 377..453 | 100 | <- | Minus |
| 3R | 10521072..10521220 | 228..376 | 100 | <- | Minus |
| 3R | 10529439..10529462 | 204..227 | 100 | <- | Minus |
| 3R | 10533911..10534006 | 108..203 | 100 | <- | Minus |
| 3R | 10561905..10561996 | 17..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:13 Download gff for
BO30362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6337100..6337259 | 513..672 | 98 | <- | Minus |
| arm_3R | 6337481..6337539 | 454..512 | 100 | <- | Minus |
| arm_3R | 6339990..6340066 | 377..453 | 100 | <- | Minus |
| arm_3R | 6346794..6346942 | 228..376 | 100 | <- | Minus |
| arm_3R | 6355161..6355184 | 204..227 | 100 | <- | Minus |
| arm_3R | 6359633..6359728 | 108..203 | 100 | <- | Minus |
| arm_3R | 6387627..6387718 | 17..107 | 96 | | Minus |
BO30362.pep Sequence
Translation from 16 to 688
> BO30362.pep
MNDDARSPGAGSTPGPLSQQPPALDTSDPDGRWCRREWSSPADARNADAS
RRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKR
GIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINA
RRRIVQPMIDQSNRAVYTPHPGPSGYGHDAMGYMMDSQAHMMHRPPGDPG
FHQGYPHYPPAEYYGQHLASFLDH
BO30362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-PA | 472 | CG17117-PA | 255..472 | 1..218 | 1199 | 100 | Plus |
| hth-PC | 487 | CG17117-PC | 255..487 | 1..218 | 1173 | 93.6 | Plus |
| achi-PA | 426 | CG8819-PA | 94..156 | 97..159 | 181 | 52.4 | Plus |
| achi-PD | 555 | CG8819-PD | 94..156 | 97..159 | 181 | 52.4 | Plus |
| achi-PC | 555 | CG8819-PC | 94..156 | 97..159 | 181 | 52.4 | Plus |
