BO30364.complete Sequence
1984 bp assembled on 2013-10-11
GenBank Submission: KX798925
> BO30364.complete
GAAGTTATCAGTCGACATGCGCATAATTCAACCGGTCCAAGGGACCAGAT
ACGGTCCATGGCCGGCCGTGGGACTGAGGCTAGTCCTGGCCCTTGCCTGG
GCAACGTCGGCAGCGGCTGCCATGGAGTCATCAGCCGAGCTGCAGGCCCT
GGGCTACGAGGCAATTAGGCCAGGTGCTGCCTCAATTAGCACATCCAGCC
CATCCAGCTCGCCACCCGGAGAATCGGCATCGACTGTGACTGCAGGGGGG
ACTCCGATTCCACCGCGCTCCGATTGGAAGTACAAACGGACGAAAGTCAA
ACGCCGGCAGCAGCGCCTCAATTCGCACAGCAATCTGCCCGGAAGCACCA
ATGCCTCCCACGCCCACCACCTCCTCAATCTGCCCCCCAGGCAGCGATAC
TTGAAGGTCAACCAGGTGTTCGAAAGCGAACGCCGCATGTCGCCGGCCGA
AATGCAGCGCAATCATGGCAAAATCGTGCTGCTCGGACTCTTTGAGCTGT
CCACATCGCGGGGACCACGTCCGGATGGTCTGAGCGAATTGGGAGCTGCC
ACCATGGCCGTGGAGCACATCAACCGCAAGCGCCTGCTGCCGGGCTACAC
CCTCGAGCTCGTGACCAACGATACTCAGTGTGATCCTGGAGTGGGCGTGG
ATCGCTTCTTCCACGCCATCTACACACAGCCCTCGACGAGGATGGTGATG
CTGCTGGGATCGGCCTGCTCGGAGGTCACCGAGAGCCTGGCGAAGGTGGT
GCCCTACTGGAACATCGTGCAGGTATCCTTCGGTTCCACATCGCCGGCGT
TGAGCGACAGGCGGGAGTTCCCCTACTTCTACAGGACGGTGGCCCCGGAC
TCCTCACACAATCCGGCGCGCATCGCTTTCATTCGGAAGTTTGGCTGGGG
CACGGTGACCACTTTCTCGCAGAACGAGGAGGTTCACTCGCTGGCGGTGA
ACAACCTGGTCACCGAACTGGAGGCGGCCAACATATCCTGTGCCGCCACC
ATCACCTTTGCGGCCACCGACTTCAAGGAGCAGCTGCTGCTACTTAGGGA
GACGGACACGCGCATCATCATCGGCAGCTTCTCGCAGGAGCTGGCCCCCC
AGATCCTGTGCGAGGCCTACAGGCTTCGAATGTTCGGGGCGGACTACGCC
TGGATCCTCCACGAGAGCATGGGGGCTCCGTGGTGGCCGGACCAGCGCAC
CGCCTGCTCTAACCACGAACTGCAGCTGGCCGTCGAGAACCTCATCGTGG
TCTCAACGCACAACAGCATCGTTGGAAATAACGTCAGCTATAGTGGACTG
AACAATCACATGTTCAACTCCCAGCTGCGCAAGCAATCCGCCCAGTTCCA
CGGCCAGGATGGATTTGGCTCCGGTTATGGTTCCAGGATCAGTATCGCTG
CAACGCAATCTGACTCTCGTCGGCGGAGGAGAAGGGGCGTGGGAGGCACC
AGCGGAGGGCACCTCTTTCCGGAGGCGATCTCGCAGTACGCGCCGCAAAC
CTACGACGCCGTGTGGGCCATCGCCCTGGCCTTGAGAGCCGCTGAGGAGC
ACTGGCGGCGGAACGAGGAGCAGTCGAAGCTGGACGGATTCGATTACACC
CGCAGCGACATGGCCTGGGAGTTCCTGCAGCAAATGGGCAAGCTCCACTT
CCTGGGAGTGTCGGGCCCCGTTTCCTTCAGCGGCCCAGATCGCGTTGGCA
CCACTGCCTTCTATCAAATCCAGCGCGGTTTGCTGGAACCGGTGGCCCTC
TACTATCCGGCCACGGATGCCCTGGACTTCCGGTGTCCCCGCTGCCGGCC
GGTGAAGTGGCACAGCGGGCAGGTACCCATCGCCAAGCGGGTGTTCAAGC
TGCGGGTGGCGACCATCGCTCCACTGGCCTTCTACACCATCGCCACCCTC
TCCAGCGTGGGAATCGCTCTGGCCATCGCCTTCCTGGCGTTCAATCTGCA
CTTTCGGAAGCTGAAGGCAAGCTTTCTAGACCAT
BO30364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R3-RG | 3918 | CG3022-PG | 1..1954 | 17..1970 | 9770 | 100 | Plus |
| GABA-B-R3-RE | 3918 | CG3022-PE | 1..1954 | 17..1970 | 9770 | 100 | Plus |
| GABA-B-R3-RD | 3918 | CG3022-PD | 1..1954 | 17..1970 | 9770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R3-RG | 5987 | CG3022-RG | 584..2537 | 17..1970 | 9770 | 100 | Plus |
| GABA-B-R3-RE | 5991 | CG3022-RE | 845..2798 | 17..1970 | 9770 | 100 | Plus |
| GABA-B-R3-RD | 5730 | CG3022-RD | 584..2537 | 17..1970 | 9770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 753119..753730 | 17..628 | 3060 | 100 | Plus |
| 2L | 23513712 | 2L | 756667..757031 | 1300..1664 | 1825 | 100 | Plus |
| 2L | 23513712 | 2L | 757127..757430 | 1663..1966 | 1520 | 100 | Plus |
| 2L | 23513712 | 2L | 755019..755297 | 771..1049 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 755828..756080 | 1048..1300 | 1265 | 100 | Plus |
| 2L | 23513712 | 2L | 754483..754632 | 625..774 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:06:13 has no hits.
BO30364.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-11 17:15:49 Download gff for
BO30364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R3-RD | 584..2535 | 17..1968 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:20 Download gff for
BO30364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R3-RD | 584..2535 | 17..1968 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:20 Download gff for
BO30364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 754487..754630 | 629..772 | 100 | -> | Plus |
| 2L | 755021..755296 | 773..1048 | 100 | -> | Plus |
| 2L | 753119..753730 | 17..628 | 100 | -> | Plus |
| 2L | 755829..756080 | 1049..1300 | 100 | -> | Plus |
| 2L | 756668..757030 | 1301..1663 | 100 | -> | Plus |
| 2L | 757128..757430 | 1664..1968 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-11 17:15:49 Download gff for
BO30364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 753119..753730 | 17..628 | 100 | -> | Plus |
| arm_2L | 754487..754630 | 629..772 | 100 | -> | Plus |
| arm_2L | 755021..755296 | 773..1048 | 100 | -> | Plus |
| arm_2L | 755829..756080 | 1049..1300 | 100 | -> | Plus |
| arm_2L | 756668..757030 | 1301..1663 | 100 | -> | Plus |
| arm_2L | 757128..757430 | 1664..1968 | 99 | | Plus |
BO30364.pep Sequence
Translation from 16 to 1984
> BO30364.pep
MRIIQPVQGTRYGPWPAVGLRLVLALAWATSAAAAMESSAELQALGYEAI
RPGAASISTSSPSSSPPGESASTVTAGGTPIPPRSDWKYKRTKVKRRQQR
LNSHSNLPGSTNASHAHHLLNLPPRQRYLKVNQVFESERRMSPAEMQRNH
GKIVLLGLFELSTSRGPRPDGLSELGAATMAVEHINRKRLLPGYTLELVT
NDTQCDPGVGVDRFFHAIYTQPSTRMVMLLGSACSEVTESLAKVVPYWNI
VQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTF
SQNEEVHSLAVNNLVTELEAANISCAATITFAATDFKEQLLLLRETDTRI
IIGSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNH
ELQLAVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGF
GSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDAVW
AIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLHFLGVSG
PVSFSGPDRVGTTAFYQIQRGLLEPVALYYPATDALDFRCPRCRPVKWHS
GQVPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLK
ASFLDH
BO30364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R3-PG | 1305 | CG3022-PG | 1..651 | 1..651 | 3387 | 100 | Plus |
| GABA-B-R3-PE | 1305 | CG3022-PE | 1..651 | 1..651 | 3387 | 100 | Plus |
| GABA-B-R3-PD | 1305 | CG3022-PD | 1..651 | 1..651 | 3387 | 100 | Plus |
| GABA-B-R3-PA | 1305 | CG3022-PA | 1..651 | 1..651 | 3387 | 100 | Plus |
| GABA-B-R3-PC | 650 | CG3022-PC | 1..650 | 1..650 | 3383 | 100 | Plus |
