BO30368.complete Sequence
2626 bp assembled on 2011-10-14
GenBank Submission: KX794652
> BO30368.complete
GAAGTTATCAGTCGACATGGCCACCTCAACGCTGCAATCTCCGTCGCCGT
CGCCATCAAACGCCTCCGTGTCATCCAAGAATCCGCAGCTGAAGCGCGTA
GTGTACTCCAAATATCGGGAACTACTTGGTTCTTATAATGATAAGGCCAA
TGCCATCATCGACACTCTGCCCGCATATATGGTTCGTCAGGATCGCGGAT
TTCAGTTGTCGGAGCTGCCCGTGAACGGGGATGCCAATCGCAACGGCCTG
GAATTGTCGTATGGACAGCGCGGAGGAGGCGGATCCGGAAACGGTGGCTA
CGAGGCGCCCGCGTGCGTGCAGAACGCGATGATGACAAAAGACAAGAAGC
CCTTCACCTACACGCCCGGCGGCATTGATCTCTCCCAGATCCGGTCGGAG
CGGATGGCCAAGCGGTTGGCGCGCAATGCCCAATCGGAAGGAGCAACCGG
AGCCGCCCAACAGAACAGACCCGCCCAGCCACAGTCGCCAGGTGGGCCAG
GTGGTGCAGCCAGTTCGATTGGAGCCGCTGCCATGGGCATGCCGTTCCAG
GTGCTGCCGCCGCCACCACCGCCGCCGCAACCACAGTCGGGTCCAAGACC
ATCGGCGGCTAGCGTTGAAAGCAGCTACAGTCCTTACACTCCGACTCCGC
AAGTGCCGCCCGTGGCCAAGAGTCCTCCGGTGCAATATCAACAGCCAACG
CCACCGGCAACACCGCCGCAGCAGCAGCAGCAACAGTCGGAGCAGCAGCC
TGCAACACGCCCGGAGTTCCGCAGTGTGCCCATGCCCACATCGCCAGCGG
TGAACGTCTACACACGTCAATCGGACAGTCCCAGATCGCCTTTCGAGCCG
CAGCAACAGCAGCAGCAGCAGCAACCACAGCGATCCACTGAGAGCCCCTT
CCGGTTTGCACAGCAGCAACAGCAACAGTCACCGCAGCAGCGTCCACCAA
CAGCGATATCGCCGCTGGCTCAGGTGCAGCAGCAGCAGCAACAGCAGTTG
CAACAGCAGCAGCAACAGCAGTTGCAACAGCAGCAGCAACAGCAGTTGCA
ACAGCAGCAGCAACAGCTCCAGCAGCTGCAGCAACAGCAGTTCCAGCAGC
AACAATTGCAGCAACAACAGTTCCAGCAACAACAGTTGCAGCAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACCGGCTGT
TCAATCAGTACCATGGCGCACTCAACGTGCTCAGCCTGGAGCACAACAGC
AACAGGATTCGCATCCACAACCAATCTACAACAATGTTCAGCAGCAGCAA
CAAAGATCTCGCGATGTCTTCAGTCCGGCAAGGAATGAAACATCGGCAGC
AAACACGTTCAATTCACAGCAGCAACAAAACCAATTTGGTGGAGCAGCAA
AGCCGACCAACGTTGGATCGCTTTACATAGCTCCACTGGCCCAGCCCACT
GAACCGCAGGCTCAACGAATCCTTTTGCAACAGCAGCAGCAGTCATCTGC
TCGGGATTCTCCCATGCGCCAACTTCCACAGCAGCAGCCGCAGACCAATC
AACCGATGAGATGGCTCAGTTCACAGCCGGCTAGCAAGGAGCAGGCTCCA
TGGGCTCGTCTCGAGGAGAATGGCAACGTCCTGCCCTCCACCTTGCGTCA
GACTACCCCGCAGCCCCAAGTCGTCCCTCAGCAGCAACCACAGCAGCAGC
AGCAGCCACAGCAGCAGCAGCAGCCCACCTTCTACCAGCCGCAGTTGGTC
CAAGGTAATGGCTACGGACCAACACCGGTTTCAGCCGCTCCCATCAGTCT
GCAGAACTTCGGATCAAATCCACAGCCTGGAGGACTACGTTTGCAGATCA
ACTTAAACACCAATGGCAACAGCAGCAATAACACAAATCAAAGTGCTCCA
CGGGAGCGTATCATACCGATAACTCTAGAGCAGACGCCGACATATGCCGC
AGCCCAGCCCAACTTTGGTGGTTACCAGAATTACCCACCACAAGCCCAGC
GATACCCGTCGCCCAATCAGCCAACGAGTACGAGTAACAACACCAATGGC
AATGCCACCCGGCTAATCCCGATAGCCATCGAGGGAGGACGAGGCGGTCC
AGTGTCCCAGTCGCCAGTGCTGCTGCAGAACGATCCACGCTCACCGCCCA
TCCAATCGAAATCGTTTAGAATATTGCAAAAGATAACCGACACCGTGGAC
GATGGCAGCGGGAATGGCGATTCGCGGCAGGACTTGCAGCAGACGCCCCA
GGAGGCGGAGCTGCAGCGGCCGCAGTTCGCCCGCCAGATGAGCGCCCAGC
AGGCAAGGAATAGTCCGACCATCGAGCAGATGCGACGCCTGCAAATCGGA
CAGGATCAGCAGAATAACCATCAGCAGTCGGGTACGCCACTAGCTTGGTC
CCCGCAAGGTAATGGAGTCTCCGCTCAGAACCGATTCACGCAACAACGAT
ATGATGCCCCCCAACAACAACAGCAATATGTGCCTCCAAGTGAACAGCAA
GCTCCGGAACCCAAAAAATACACAGGCAGCGCTATACCCAGTCGATCATT
CAAAATTCTACAGGCAATGACAACACCTGAAAATGCCGGACCTGGTCAAT
CGGATCTAGCAAGCTTTCTAGACCAT
BO30368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-RM | 2595 | CG44085-PM | 1..2592 | 17..2608 | 12960 | 100 | Plus |
| CG44085-RO | 7146 | CG44085-PO | 1..2572 | 17..2588 | 12860 | 100 | Plus |
| CG44085-RK | 2940 | CG44085-PK | 919..2937 | 590..2608 | 10095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-RM | 3494 | CG44085-RM | 240..2831 | 17..2608 | 12960 | 100 | Plus |
| CG44085-RO | 8804 | CG44085-RO | 257..2828 | 17..2588 | 12860 | 100 | Plus |
| CG44085-RK | 3856 | CG44085-RK | 1175..3193 | 590..2608 | 10095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13272233..13273048 | 590..1405 | 4080 | 100 | Plus |
| 2L | 23513712 | 2L | 13273618..13274117 | 1405..1904 | 2500 | 100 | Plus |
| 2L | 23513712 | 2L | 13271296..13271629 | 259..592 | 1670 | 100 | Plus |
| 2L | 23513712 | 2L | 13275588..13275867 | 2131..2410 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 13267731..13267975 | 17..261 | 1225 | 100 | Plus |
| 2L | 23513712 | 2L | 13274690..13274850 | 1970..2130 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 13276377..13276513 | 2453..2589 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 13274309..13274378 | 1903..1972 | 350 | 100 | Plus |
| 2L | 23513712 | 2L | 13276245..13276291 | 2407..2453 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2659 | 935..1302 | 565 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7192 | 910..1384 | 553 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6893 | 1014..1193 | 535 | 79.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2665 | 846..1188 | 518 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2824 | 910..1383 | 518 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2658 | 846..1193 | 516 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7183 | 842..1303 | 511 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6694..7087 | 838..1244 | 484 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..7003 | 910..1384 | 433 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7092 | 846..1198 | 404 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2961 | 846..1407 | 400 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2513 | 1094..1303 | 381 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2771..3034 | 910..1170 | 377 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2145..2996 | 973..1886 | 354 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2999 | 687..1090 | 345 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..7207 | 846..1283 | 319 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6520..6942 | 965..1377 | 279 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..7199 | 846..1193 | 272 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6892 | 1023..1384 | 247 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1171 | 846..946 | 163 | 65 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 658..728 | 1210..1139 | 141 | 68.1 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3210..3318 | 1445..1553 | 139 | 60.9 | Plus |
BO30368.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:51 Download gff for
BO30368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6043-RM | 240..2831 | 17..2610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:58 Download gff for
BO30368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44085-RM | 240..2831 | 17..2610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:16 Download gff for
BO30368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44085-RM | 240..2831 | 17..2610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:16 Download gff for
BO30368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13275588..13275865 | 2131..2408 | 100 | -> | Plus |
| 2L | 13276247..13276291 | 2409..2453 | 100 | -> | Plus |
| 2L | 13276378..13276512 | 2454..2588 | 100 | -> | Plus |
| 2L | 13267731..13267972 | 17..258 | 100 | -> | Plus |
| 2L | 13271296..13271627 | 259..590 | 100 | -> | Plus |
| 2L | 13272234..13273048 | 591..1405 | 100 | -> | Plus |
| 2L | 13273619..13274116 | 1406..1903 | 100 | -> | Plus |
| 2L | 13274310..13274376 | 1904..1970 | 100 | -> | Plus |
| 2L | 13274691..13274850 | 1971..2130 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:58 Download gff for
BO30368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13275588..13275865 | 2131..2408 | 100 | -> | Plus |
| arm_2L | 13276247..13276291 | 2409..2453 | 100 | -> | Plus |
| arm_2L | 13276378..13276512 | 2454..2588 | 100 | -> | Plus |
| arm_2L | 13267731..13267972 | 17..258 | 100 | -> | Plus |
| arm_2L | 13271296..13271627 | 259..590 | 100 | -> | Plus |
| arm_2L | 13272234..13273048 | 591..1405 | 100 | -> | Plus |
| arm_2L | 13273619..13274116 | 1406..1903 | 100 | -> | Plus |
| arm_2L | 13274310..13274376 | 1904..1970 | 100 | -> | Plus |
| arm_2L | 13274691..13274850 | 1971..2130 | 100 | -> | Plus |
BO30368.pep Sequence
Translation from 16 to 2626
> BO30368.pep
MATSTLQSPSPSPSNASVSSKNPQLKRVVYSKYRELLGSYNDKANAIIDT
LPAYMVRQDRGFQLSELPVNGDANRNGLELSYGQRGGGGSGNGGYEAPAC
VQNAMMTKDKKPFTYTPGGIDLSQIRSERMAKRLARNAQSEGATGAAQQN
RPAQPQSPGGPGGAASSIGAAAMGMPFQVLPPPPPPPQPQSGPRPSAASV
ESSYSPYTPTPQVPPVAKSPPVQYQQPTPPATPPQQQQQQSEQQPATRPE
FRSVPMPTSPAVNVYTRQSDSPRSPFEPQQQQQQQQPQRSTESPFRFAQQ
QQQQSPQQRPPTAISPLAQVQQQQQQQLQQQQQQQLQQQQQQQLQQQQQQ
LQQLQQQQFQQQQLQQQQFQQQQLQQQQQQQQQQQQQQQQQQPAVQSVPW
RTQRAQPGAQQQQDSHPQPIYNNVQQQQQRSRDVFSPARNETSAANTFNS
QQQQNQFGGAAKPTNVGSLYIAPLAQPTEPQAQRILLQQQQQSSARDSPM
RQLPQQQPQTNQPMRWLSSQPASKEQAPWARLEENGNVLPSTLRQTTPQP
QVVPQQQPQQQQQPQQQQQPTFYQPQLVQGNGYGPTPVSAAPISLQNFGS
NPQPGGLRLQINLNTNGNSSNNTNQSAPRERIIPITLEQTPTYAAAQPNF
GGYQNYPPQAQRYPSPNQPTSTSNNTNGNATRLIPIAIEGGRGGPVSQSP
VLLQNDPRSPPIQSKSFRILQKITDTVDDGSGNGDSRQDLQQTPQEAELQ
RPQFARQMSAQQARNSPTIEQMRRLQIGQDQQNNHQQSGTPLAWSPQGNG
VSAQNRFTQQRYDAPQQQQQYVPPSEQQAPEPKKYTGSAIPSRSFKILQA
MTTPENAGPGQSDLASFLDH
BO30368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44085-PM | 864 | CG44085-PM | 1..864 | 1..864 | 4509 | 100 | Plus |
| CG44085-PO | 2381 | CG44085-PO | 1..857 | 1..857 | 4471 | 100 | Plus |
| CG44085-PK | 979 | CG44085-PK | 1..979 | 1..864 | 3982 | 82.5 | Plus |
| CG44085-PJ | 979 | CG44085-PJ | 1..979 | 1..864 | 3982 | 82.5 | Plus |
| CG44085-PN | 1007 | CG44085-PN | 1..1007 | 1..864 | 3850 | 78.6 | Plus |
