BO30371.complete Sequence
1705 bp assembled on 2011-10-14
GenBank Submission: KX799713
> BO30371.complete
GAAGTTATCAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCG
GTGCGTCCATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTG
ATTATGCAAGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAAT
TGTCAACAGATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATG
GCTCATGCCCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATC
TTTTCGGCATTCACGCTCATTACAAAGAAGTTCGAAGAGTTCAATGATGT
AGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGATTGTGCCCGCCA
GTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAGATCAAGGAAATT
CGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGAAATGCTACCCAA
TTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGTGCCGAGCAGATCACCC
AGTGCATCTATCAGATATGTCTTGTCATGTTGGAGTCCCCGCCACGCGGT
GCCACCATCCCGTACCGACCAAAACCACAGGTTACTGGCCCCGTCATCCT
GGCCAATGGACAGGCTTTCACCATCCAAGGAAACTACGCGGTGCCCACAC
AAGAGGTGGCCAAGAACCCGCTGGCCAGTCTGGCCGCCTTGGGCCTGGCT
GGGATGAATCCGGCCAGCACTGGGGGCATCAACCACACAGGTGAGTTGAG
CGCTTCTGCGGCCAGATGCCAGACAGATTTCCAATCTAATCTAGGCTCTG
CCCCAGCAGCCTTGGCTGCACTGGCCGGGTCGCAACTGCGTACAGCGAAT
CCCGCGAACCGAGCCCAGCAGCAGCAGCACGAGATGACCGTCTCAAACGA
CCTGATTGGCTGCATCATCGGCAAGGGTGGCACCAAGATCGCCGAGATTC
GCCAAATATCCGGCGCCATGATCCGGATCTCCAACTGCGAGGAGCGCGAG
GGCGGCAATACCGACCGCACCATCACCATCAGCGGCAATCCGGACTCGGT
GGCCCTGGCCCAATACTTAATCAATATGAGTGTTGAGCTGCAGAAGGCCA
ATCTCCTGGAGCAGGCCCAGTCCCAGCAGAACGGAGGTGCTGCCGCAGCT
CCCGGAGCTGCTGCTGCTGGAGTGGCGGCAGTCACCGGAGCAGCAGCTCC
GACCTCGGCCACAAACGGAGCTATCACGACGGTGACCCTCACCAGCGGCA
CTGGTGTCGTGGGAGCCGGTGCTGCAGGAGCCGCCGGGGTTGCCAATGGC
GCAAATCCGGCGGCAAACGGCGGCGGCAGCAATGGCACCATCTCCGCCAC
CGGATACGCCAGTGCCAATGGCGGCCAGGCCACAAATGGATCGGTCGGAG
TAAACCCGGCAGCGGCCGCCGCCCTGTCCAGTCCTCTGGCCTCGGCCCTT
CAGCTGCTGACCAAACCGGGAGCCCTAAGCGCTCTGTCCAACCTGAGCGC
CCTCGACCTGCTCAACCTAACCACGCTGGGAAACACCAATGGGGCCGGAG
CCAATCCGGGCGGACCGCCTGTGCAGACGACGGGCGTAAATCGGGCAAAG
GGTCACTATGCCACCTCCCGATTCCGGCAGCACCAGACGGAGACCGGTGG
CGAAGCGGAGAAGCCGCGCAACAAGTTTAATCCGTACGCAAGCTTTCTAG
ACCAT
BO30371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RE | 1674 | CG7437-PE | 1..1671 | 17..1687 | 8325 | 99.9 | Plus |
| mub-RF | 1674 | CG7437-PF | 1..1671 | 17..1687 | 8325 | 99.9 | Plus |
| mub-RA | 1161 | CG7437-PA | 1..1076 | 17..1080 | 5135 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RE | 3441 | CG7437-RE | 841..2512 | 16..1687 | 8330 | 99.9 | Plus |
| mub-RF | 3553 | CG7437-RF | 953..2624 | 16..1687 | 8330 | 99.9 | Plus |
| mub-RA | 3437 | CG7437-RA | 841..1917 | 16..1080 | 5140 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21922577..21923185 | 1079..1687 | 3045 | 100 | Plus |
| 3L | 28110227 | 3L | 21920901..21921327 | 654..1080 | 2120 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21915260..21915424 | 371..535 | 810 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21915534..21915657 | 534..657 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 171..289 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 16..116 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915112..21915200 | 288..376 | 430 | 98.9 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 114..172 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2859 | 1200..1133 | 123 | 66.2 | Minus |
BO30371.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:53 Download gff for
BO30371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 954..2624 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:39 Download gff for
BO30371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 954..2624 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:52 Download gff for
BO30371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RF | 954..2624 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:52 Download gff for
BO30371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21907822..21907920 | 17..115 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 116..172 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 173..289 | 100 | -> | Plus |
| 3L | 21915114..21915195 | 290..371 | 100 | -> | Plus |
| 3L | 21915261..21915424 | 372..535 | 99 | -> | Plus |
| 3L | 21915536..21915655 | 536..655 | 100 | -> | Plus |
| 3L | 21920903..21921327 | 656..1080 | 99 | -> | Plus |
| 3L | 21922579..21923185 | 1081..1689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:39 Download gff for
BO30371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900922..21901020 | 17..115 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 116..172 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 173..289 | 100 | -> | Plus |
| arm_3L | 21908214..21908295 | 290..371 | 100 | -> | Plus |
| arm_3L | 21908361..21908524 | 372..535 | 99 | -> | Plus |
| arm_3L | 21908636..21908755 | 536..655 | 100 | -> | Plus |
| arm_3L | 21914003..21914427 | 656..1080 | 99 | -> | Plus |
| arm_3L | 21915679..21916285 | 1081..1689 | 99 | | Plus |
BO30371.pep Sequence
Translation from 16 to 1705
> BO30371.pep
MEDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFR
EESGAKINISDGSCPERIVTVSGTTNAIFSAFTLITKKFEEFNDVGKVGK
TQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERA
VTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILANGQA
FTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTGELSASAAR
CQTDFQSNLGSAPAALAALAGSQLRTANPANRAQQQQHEMTVSNDLIGCI
IGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQY
LINMSVELQKANLLEQAQSQQNGGAAAAPGAAAAGVAAVTGAAAPTSATN
GAITTVTLTSGTGVVGAGAAGAAGVANGANPAANGGGSNGTISATGYASA
NGGQATNGSVGVNPAAAAALSSPLASALQLLTKPGALSALSNLSALDLLN
LTTLGNTNGAGANPGGPPVQTTGVNRAKGHYATSRFRQHQTETGGEAEKP
RNKFNPYASFLDH
BO30371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-PE | 557 | CG7437-PE | 1..557 | 1..557 | 2792 | 100 | Plus |
| mub-PF | 557 | CG7437-PF | 1..557 | 1..557 | 2792 | 100 | Plus |
| mub-PI | 539 | CG7437-PI | 1..539 | 1..557 | 2673 | 96.8 | Plus |
| mub-PD | 539 | CG7437-PD | 1..539 | 1..557 | 2633 | 95.4 | Plus |
| mub-PK | 573 | CG7437-PK | 1..573 | 1..557 | 2505 | 85.9 | Plus |
