BO30372.complete Sequence
2314 bp assembled on 2013-09-16
GenBank Submission: KX799814
> BO30372.complete
GAAGTTATCAGTCGACATGTCCTTCACCGGTCCAATCCTAATATGCCTGA
TCATGGGAGCCATTACCCATGCAAATTCGCACGAGCATGCCGATGGCTTT
AAGCCAGATGGTGAAATCCTGCGCGTTCTGGTGAACAGCTCGGCACAAAT
CAAATGCGATGTGGGCTCCAGCCAGGCCGATGACAAAGTGCTTCTGGTTG
TTTGGTACAAGAATAATTTACCCATTTACAGCTACGACACACGTGGCGCC
CACGCTGGCACCCCATCCCATTGGCGTGACGAGGAGGTCCTTGAAGATCG
GGCCGTATTTCGAACGCACAAGGAGCCGGCGGAATTGATTATAAATCCGG
TTAAGGAAAAGGATGCGGGCAACTTTCGGTGTCGCGTGGACTTCAAGCTT
TCGCAGACCCGCAACAGCAATGTCAATTTGGAGGTTGTCGTGCCGCCAAC
GCAGCCGATTATCTTCAATGAACGCCGCCTGCGAATCGATTCGAGAGCAG
GTCCTTATGAAGAAGGTGGCAGCCTGGAAGTCACCTGCGTTGTTTACGGA
GGCTCTCCGCCGCCGACAGTCATTTGGCTGATGAATGGGCAGCTGCAGAA
CAGCGTTGTCGATTACACATACGATGGCGCCATCAACAGCAAGCTGGTGG
TACGCAACCTGTCAAGAATCCACCAGCATGCGGTCTACACCTGCCAGGCC
AGCAATTTCCACAAGAAATATGTGGCCACCAACATAACGATCGACCTATA
CCTGCGCCCTCTGTTGGTGGAAATCAGCTTCAATAATCAGCCGATGTCAG
CGGATCGAAAGTATGAGATCGAGTGCCAGGCGATCGGATCGAGGCCACCG
GCCAAAATCACCTGGTGGATGGGCAATCTCGAGCTGCATGGCCATAGCCA
GAAGGTTTCGGAGGATGGCAATGTCAGCACATCGGTGCTCTCGATCACAC
CCACAAGAGAGGACCATGGCAAGGCTTTATCCTGCAGGGCAACCAATGAA
CTCGTTCGAAATGGCATTCGAGAAACGGCCATGAAGTTGAATGTGTTCTT
CATTCCCACCTTGCAGCTGGACCTGGGCTCCAATCTGAATCCGGAGGATA
TCGAGGAAGGCGATGATGTCTACTTTGAGTGTAAAGTGCATGCAAATCCG
GCTGCTTATAAAGTTGTATGGAAGCATAATCATCAAATCATCCAGCACAA
CCAGCGAGCGGGCGTGATTGTCAGCAGCGGAGATCTGGCGCTCCAGGGCG
TCACTCGTCACCAGGCTGGAAACTACACCTGCACCGCCTCGAACGTGGAG
GGCGATGGGGATTCCAATGTGGTCGAGCTGAAAGTGATGTATAAACCAAT
TTGCCGGCCCGATCAAAAGAAAATCTATGGAGTAGCGCGAAACGAGGCCG
CCGAAATAGTGTGCGAAGTGGATGCCTTTCCGCCGCCGGAGAACTTCAAG
TGGTCCTTCAACAACACGGCGGAGACCTTCGACATGCCGCAGAGCGGTTT
CCGGCCCCATTCTGCCCAGGGTTCGACCCTCACCTACACCCCCGTCAAGG
AAATGGACTTTGGCACCATCATGTGCTGGGCCGACAACAATGTGGGTCAG
CAGAAGGAGCCCTGTGTGTTCCATTTGATAGCCGCTGGCAAACCGGAAGC
GCCCACCAATTGTACGGTGGTCAATCAAACGTCCGACTCGCTGGAGGTTT
ATTGCATTGAAGGATTCGACGGCGGAATGCGGCAGTGGTTCCTCATGGAA
ATCTTCGATCAGCACAGTGGTCAGCTTCAGGCCAACATTAGTGCCAAGTT
TGCGGCCCTGAGTGTCACGGGTCTGGATGCAGGTCGTCTCTTCCGGATCT
ATGTGTATGCCGTCAATGGACGAGGACGCAGCGATGCCATTGCCCTCGAT
GGATACACTTTGAAGGCGGCCGAAAAGCAAACCGTTGCCTTGACCTCCTA
CAAGGGCAGTGCCCAGAGTCCGGACAACTTTGAGCTGACACCGATCCTGT
CGATTGGCATCTTCGTTGGCATCCTGGTGGCCATCGTGTGCATCGGAATC
GGAACAATTGCCGCACTGAAGTTGCGCTCGCACAAGCATCAGCAGCAACA
GAAATTCGTACATCCCAATGCGAAATTCTCACGTCCGGGCAATTTGCAAA
TTAAGGACAAAATCTCATTGCCATTGAGTCACTCCGAGGAGATGTACGAC
GAGAAGAATCCCGATGTTGTGCCCTACAATGAGGGTAAGTTACCGGTTCC
AGAAACACTTTGCTTAGATCCCCATCCTTTCGGTTTGCCCTCAAGAGCAA
GCTTTCTAGACCAT
BO30372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34114-RC | 2283 | CG34114-PC | 1..2280 | 17..2296 | 11400 | 100 | Plus |
| CG34114-RB | 3264 | CG34114-PB | 1..2218 | 17..2234 | 11090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34114-RC | 4318 | CG34114-RC | 1579..3859 | 16..2296 | 11405 | 100 | Plus |
| CG34114-RB | 6818 | CG34114-RB | 1579..3797 | 16..2234 | 11095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11045244..11045606 | 1934..2296 | 1815 | 100 | Plus |
| 3R | 32079331 | 3R | 11044001..11044224 | 1711..1934 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 11034717..11034926 | 1341..1550 | 1050 | 100 | Plus |
| 3R | 32079331 | 3R | 11019666..11019868 | 550..752 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 11039909..11040074 | 1548..1713 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 11032512..11032671 | 1181..1340 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 11023468..11023621 | 753..906 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 11023671..11023817 | 903..1049 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 11027198..11027328 | 1050..1180 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 11012217..11012345 | 228..356 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 11012011..11012137 | 105..231 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 11013317..11013429 | 440..552 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 10993514..10993605 | 16..107 | 460 | 100 | Plus |
| 3R | 32079331 | 3R | 11012439..11012525 | 354..440 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:01:26 has no hits.
BO30372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:23 Download gff for
BO30372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34114-RC | 1580..3859 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:39 Download gff for
BO30372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34114-RC | 1580..3859 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:39 Download gff for
BO30372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11019668..11019868 | 552..752 | 100 | -> | Plus |
| 3R | 11023468..11023619 | 753..904 | 100 | -> | Plus |
| 3R | 11023673..11023817 | 905..1049 | 100 | -> | Plus |
| 3R | 11027198..11027328 | 1050..1180 | 100 | -> | Plus |
| 3R | 11032512..11032671 | 1181..1340 | 100 | -> | Plus |
| 3R | 11034717..11034925 | 1341..1549 | 100 | -> | Plus |
| 3R | 11039911..11040073 | 1550..1712 | 100 | -> | Plus |
| 3R | 11044003..11044224 | 1713..1934 | 100 | -> | Plus |
| 3R | 11045245..11045606 | 1935..2298 | 99 | | Plus |
| 3R | 11012221..11012344 | 232..355 | 100 | -> | Plus |
| 3R | 11012441..11012525 | 356..440 | 100 | -> | Plus |
| 3R | 11013318..11013428 | 441..551 | 100 | -> | Plus |
| 3R | 10993515..10993605 | 17..107 | 100 | -> | Plus |
| 3R | 11012014..11012137 | 108..231 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:23 Download gff for
BO30372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6838163..6838247 | 356..440 | 100 | -> | Plus |
| arm_3R | 6819237..6819327 | 17..107 | 100 | -> | Plus |
| arm_3R | 6837736..6837859 | 108..231 | 100 | -> | Plus |
| arm_3R | 6837943..6838066 | 232..355 | 100 | -> | Plus |
| arm_3R | 6839040..6839150 | 441..551 | 100 | -> | Plus |
| arm_3R | 6845390..6845590 | 552..752 | 100 | -> | Plus |
| arm_3R | 6849190..6849341 | 753..904 | 100 | -> | Plus |
| arm_3R | 6849395..6849539 | 905..1049 | 100 | -> | Plus |
| arm_3R | 6852920..6853050 | 1050..1180 | 100 | -> | Plus |
| arm_3R | 6858234..6858393 | 1181..1340 | 100 | -> | Plus |
| arm_3R | 6860439..6860647 | 1341..1549 | 100 | -> | Plus |
| arm_3R | 6865633..6865795 | 1550..1712 | 100 | -> | Plus |
| arm_3R | 6869725..6869946 | 1713..1934 | 100 | -> | Plus |
| arm_3R | 6870967..6871328 | 1935..2298 | 99 | | Plus |
BO30372.pep Sequence
Translation from 16 to 2314
> BO30372.pep
MSFTGPILICLIMGAITHANSHEHADGFKPDGEILRVLVNSSAQIKCDVG
SSQADDKVLLVVWYKNNLPIYSYDTRGAHAGTPSHWRDEEVLEDRAVFRT
HKEPAELIINPVKEKDAGNFRCRVDFKLSQTRNSNVNLEVVVPPTQPIIF
NERRLRIDSRAGPYEEGGSLEVTCVVYGGSPPPTVIWLMNGQLQNSVVDY
TYDGAINSKLVVRNLSRIHQHAVYTCQASNFHKKYVATNITIDLYLRPLL
VEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELHGHSQKVSED
GNVSTSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPTLQ
LDLGSNLNPEDIEEGDDVYFECKVHANPAAYKVVWKHNHQIIQHNQRAGV
IVSSGDLALQGVTRHQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQ
KKIYGVARNEAAEIVCEVDAFPPPENFKWSFNNTAETFDMPQSGFRPHSA
QGSTLTYTPVKEMDFGTIMCWADNNVGQQKEPCVFHLIAAGKPEAPTNCT
VVNQTSDSLEVYCIEGFDGGMRQWFLMEIFDQHSGQLQANISAKFAALSV
TGLDAGRLFRIYVYAVNGRGRSDAIALDGYTLKAAEKQTVALTSYKGSAQ
SPDNFELTPILSIGIFVGILVAIVCIGIGTIAALKLRSHKHQQQQKFVHP
NAKFSRPGNLQIKDKISLPLSHSEEMYDEKNPDVVPYNEGKLPVPETLCL
DPHPFGLPSRASFLDH
BO30372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34114-PC | 760 | CG34114-PC | 1..760 | 1..760 | 4028 | 100 | Plus |
| CG34114-PB | 1087 | CG34114-PB | 1..739 | 1..739 | 3908 | 100 | Plus |
| CG12950-PB | 939 | CG12950-PB | 31..723 | 38..736 | 1290 | 38.5 | Plus |
| CG12950-PA | 939 | CG12950-PA | 31..723 | 38..736 | 1290 | 38.5 | Plus |
| CG14372-PC | 1001 | CG14372-PC | 84..778 | 38..721 | 1280 | 38 | Plus |
