BO30376.complete Sequence
844 bp assembled on 2012-04-24
GenBank Submission: KX796507
> BO30376.complete
GAAGTTATCAGTCGACATGACCGAGGTGAAGATACCCAATCACATAATGC
GCCTGAAGAGCGCCACTCTGGGCTGCCGTTACGCCCTCGACGGGGAGTCC
TTGTACTCGGTGAAGTGGTATAAGGACGGGCACGAGATCTACCGCTATGT
GCCACGCGATAAGCCCCCCGGACAGTCCTTCCCCCTGCCCGGAGTCAACA
TCGATCTGCGTAACTCCTCGGACACCCAGATTCTCCTGCGCCGCGTTACC
CTCCAGAGTTCCGGACTTTATCGGTGCGAGGTGTCCGGCGAGGCGCCCGC
ATTCAACACCGTATCCGAGTCGGAGACCATGACCGTTGTGGTGACCCCCA
ACCACGGACCGAAAATAACAGGTGGCCAGCCGCGCTACCAAATTGGAGAC
ATCGTTCGGGTTAACTGCACCTCATCGCCGTCCAAGCCCGTCTGTCACCT
CAGTTGGCTAATAAATGGGGAACCGGTGCAAAAGACACACCTTCGGCAAT
ACGACAAGGTGGTGGTGAATCGAGATGGGTTGGAGATGGCTCGCTTGGGG
CTGGAGTTCCGGGTGAGGTCCTTCCACTTTAAGCACGGCGACATGAAGTT
AAAGTGCGTGGCCAAGATCAGCTCACTGTATCTGCAAAGCAACGAGGAGA
GTGTGGAAAGCGATCGCCAGCATCGGGCCCCGGCATTGGAATCTCGGGAG
ACGGTAGCAGCCAAGTCCAGCACGATTGCTGCCGCCTGTTCAAAACTGCC
ATCAAGCCTGATTGTCTCACTGCCTCCTGTTCTCCTGCTGCTGCTGTTTC
AAAATTGGAACTGGCCACGAAATAGTGCAAGCTTTCTAGACCAT
BO30376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIa-RE | 1032 | CG12621-PE | 220..1029 | 17..826 | 4050 | 100 | Plus |
| beat-IIIa-RD | 1032 | CG12621-PD | 220..1029 | 17..826 | 4050 | 100 | Plus |
| beat-IIIb-RD | 1215 | CG33179-PD | 169..743 | 89..663 | 385 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIa-RE | 4457 | CG12621-RE | 956..1765 | 17..826 | 4050 | 100 | Plus |
| beat-IIIa-RD | 1457 | CG12621-RD | 557..1366 | 17..826 | 4050 | 100 | Plus |
| CG34106-RB | 4457 | CG34106-RB | 956..1765 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17169813..17170076 | 341..604 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 17158562..17158750 | 17..205 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 17161861..17161996 | 206..341 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 17170135..17170260 | 603..728 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 17170328..17170426 | 728..826 | 495 | 100 | Plus |
| 2L | 23513712 | 2L | 16990240..16990368 | 341..469 | 210 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:03:22 has no hits.
BO30376.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:15 Download gff for
BO30376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIa-RD | 220..1029 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:10 Download gff for
BO30376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RB | 956..1765 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:03:14 Download gff for
BO30376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34106-RB | 956..1765 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:03:14 Download gff for
BO30376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17161861..17161996 | 206..341 | 100 | -> | Plus |
| 2L | 17169814..17170076 | 342..604 | 100 | -> | Plus |
| 2L | 17170137..17170260 | 605..728 | 100 | -> | Plus |
| 2L | 17170329..17170426 | 729..828 | 98 | | Plus |
| 2L | 17158562..17158750 | 17..205 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:10 Download gff for
BO30376.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17158562..17158750 | 17..205 | 100 | -> | Plus |
| arm_2L | 17161861..17161996 | 206..341 | 100 | -> | Plus |
| arm_2L | 17169814..17170076 | 342..604 | 100 | -> | Plus |
| arm_2L | 17170137..17170260 | 605..728 | 100 | -> | Plus |
| arm_2L | 17170329..17170426 | 729..828 | 98 | | Plus |
BO30376.pep Sequence
Translation from 16 to 844
> BO30376.pep
MTEVKIPNHIMRLKSATLGCRYALDGESLYSVKWYKDGHEIYRYVPRDKP
PGQSFPLPGVNIDLRNSSDTQILLRRVTLQSSGLYRCEVSGEAPAFNTVS
ESETMTVVVTPNHGPKITGGQPRYQIGDIVRVNCTSSPSKPVCHLSWLIN
GEPVQKTHLRQYDKVVVNRDGLEMARLGLEFRVRSFHFKHGDMKLKCVAK
ISSLYLQSNEESVESDRQHRAPALESRETVAAKSSTIAAACSKLPSSLIV
SLPPVLLLLLFQNWNWPRNSASFLDH
BO30376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIa-PE | 343 | CG12621-PE | 74..343 | 1..270 | 1414 | 100 | Plus |
| beat-IIIa-PD | 343 | CG12621-PD | 74..343 | 1..270 | 1414 | 100 | Plus |
| beat-IIIb-PD | 404 | CG33179-PD | 33..266 | 1..234 | 920 | 72.6 | Plus |
| beat-IIIc-PB | 361 | CG15138-PB | 27..294 | 1..260 | 777 | 56.3 | Plus |
| beat-IIIc-PA | 383 | CG15138-PA | 27..296 | 1..272 | 771 | 56.4 | Plus |
