BO30377.complete Sequence
1123 bp assembled on 2011-09-27
GenBank Submission: KX793894
> BO30377.complete
GAAGTTATCAGTCGACATGAGGATCCATCGGCATTTTGTGTTGGGTCTGC
TCGGTGTGCTCTGTTTGGCCATCGGAGGCAGTCAATCCAAGGCTGTGGTG
GATCAGCAGCCTGCAGCTTCCCAGGTGGATAGCAAAAGTGTCGCTCAGCA
GAGGATCGATCTGGGATTGGGTCTGGGCGATGACCTGATCCACGACCACC
ATCACGAGCACATAATCGAACATCACGAACATCATCACGAGCACCATGAC
CCCGGGTACTGGAAGAAGAAGGTCACTTGGAAGGAGGGATGGAAGAAAAT
TTGGAATCCGGCTAAGAAACAAATCTGGAATCCTTCATGGAAGAAGATCT
GGAAGCCACATTGGGTGAAAGTGCCCGGCTGGAAGGAAATACAGGTTCCA
GCTTGGAAACAAATTTGGGTTCCTCACTGGAAAGAGATTTTAGTGCCAGC
CTGGAAGGATATTCAAGTACCCGATTACAAGCAGATCTGGACACCAGAAC
TAGTCAAGGTTGGCATTCCCGGAGAAAAATATTTGGGCAAGGATCACGAA
GGTTGGGAGTACACCAGCCACGATTTGTGGAAGAAGAAAGTGGTCTGGAA
ATCGCACTGGAAGAAGATCTGGAAGCCAGCCAAGAAGCAAATCTGGGTGC
CAGAGAAGAAATTGGAGTGGAAGGAGGCATGGAAGCAGTACTGGAAGCCA
GCGAAGAAGGAAATCTGGACCGATAAATTGGAATGGAAGGAGGCATGGAA
GCAGATTTGGGTGCCCGGCTGGAAGGAGATCTGGGTGCCTGGATGGAAAA
AGATCTGGAAGCCAGTGGTCATTTCAGAATGGTTCCCCTCGCCCGATCAC
CACGATCATCATCATCATGAGCACCATGATTGGGATCGCAAGGACACAGG
TGTTACGGCCACCAGGACGGCAGATGGCAAAGATAAGGTGGTCTGGAAAC
GAGATGACACCAATGCCGCTGGCAAGCCAACAATGCTGCAGCCAGTGGCC
AGCGCCGACTTCCAGGCCAAGTCTCTGGAGGCAGCTAAATCCCCCGTAGC
AGCACCTGCCGCCTCGGTGGCCACCACCTCGCAGTCATTCAAGTTTCCCG
GCGCGGCAAGCTTTCTAGACCAT
BO30377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15615-RB | 1092 | CG15615-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG12164-RB | 990 | CG12164-PB | 487..597 | 512..622 | 210 | 79.3 | Plus |
| CG12164-RA | 990 | CG12164-PA | 487..597 | 512..622 | 210 | 79.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15615-RB | 1429 | CG15615-RB | 148..1237 | 16..1105 | 5450 | 100 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 575..685 | 512..622 | 210 | 79.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 575..685 | 512..622 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16793311..16793686 | 1105..730 | 1880 | 100 | Minus |
| 2R | 25286936 | 2R | 16794395..16794701 | 346..40 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 16793740..16793890 | 735..585 | 740 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16794091..16794183 | 510..418 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 16793954..16794034 | 586..506 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 16794242..16794317 | 420..345 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 7312516..7312626 | 512..622 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:03 has no hits.
BO30377.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 15:32:12 Download gff for
BO30377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 149..1237 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:00 Download gff for
BO30377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 149..1237 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:13 Download gff for
BO30377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 149..1237 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:13 Download gff for
BO30377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16793309..16793685 | 731..1107 | 99 | <- | Minus |
| 2R | 16793745..16793888 | 587..730 | 100 | <- | Minus |
| 2R | 16793954..16794031 | 509..586 | 100 | <- | Minus |
| 2R | 16794093..16794182 | 419..508 | 100 | <- | Minus |
| 2R | 16794244..16794315 | 347..418 | 100 | <- | Minus |
| 2R | 16794395..16794700 | 41..346 | 100 | <- | Minus |
| 2R | 16796236..16796259 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:00 Download gff for
BO30377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12681250..12681393 | 587..730 | 100 | <- | Minus |
| arm_2R | 12681459..12681536 | 509..586 | 100 | <- | Minus |
| arm_2R | 12681598..12681687 | 419..508 | 100 | <- | Minus |
| arm_2R | 12681749..12681820 | 347..418 | 100 | <- | Minus |
| arm_2R | 12680814..12681190 | 731..1107 | 99 | <- | Minus |
| arm_2R | 12681900..12682205 | 41..346 | 100 | <- | Minus |
| arm_2R | 12683741..12683764 | 17..40 | 100 | | Minus |
BO30377.pep Sequence
Translation from 16 to 1123
> BO30377.pep
MRIHRHFVLGLLGVLCLAIGGSQSKAVVDQQPAASQVDSKSVAQQRIDLG
LGLGDDLIHDHHHEHIIEHHEHHHEHHDPGYWKKKVTWKEGWKKIWNPAK
KQIWNPSWKKIWKPHWVKVPGWKEIQVPAWKQIWVPHWKEILVPAWKDIQ
VPDYKQIWTPELVKVGIPGEKYLGKDHEGWEYTSHDLWKKKVVWKSHWKK
IWKPAKKQIWVPEKKLEWKEAWKQYWKPAKKEIWTDKLEWKEAWKQIWVP
GWKEIWVPGWKKIWKPVVISEWFPSPDHHDHHHHEHHDWDRKDTGVTATR
TADGKDKVVWKRDDTNAAGKPTMLQPVASADFQAKSLEAAKSPVAAPAAS
VATTSQSFKFPGAASFLDH
BO30377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15615-PB | 363 | CG15615-PB | 1..363 | 1..363 | 2104 | 100 | Plus |
| CG12164-PB | 329 | CG12164-PB | 21..326 | 74..279 | 630 | 40.5 | Plus |
| CG12164-PA | 329 | CG12164-PA | 21..326 | 74..279 | 630 | 40.5 | Plus |
