BO30386.complete Sequence
883 bp assembled on 2011-09-27
GenBank Submission: KX797022
> BO30386.complete
GAAGTTATCAGTCGACATGTGGCTAAAGGCGCTTGTTCTACTGCTTTCGA
TTCGATATTTGGCGGCCACGTGCAATGTGTGTCAAAGTGATAGCAATGTC
GCTTGTCACAGTGAAACCACTTTTTCCATCTGCTATGACGGAGTTCCATC
GTATGATCTCTTGCCATGTCCAAAGGACTTTTATTGCACGGATGGCTTTT
ACACTTGCTATCAAAATGCTAATCCGGTTTGCAAAACAGAGGAGGACACT
TCCACCACCGAGATCCAGACAACCAGTACAACCACTCCTAGCCCCATTAC
CACGACAACCACTAAGAACCCAACTACCACTGCTACCCCAATTACCACAA
CAACCACTGAGATCACGACTACAGAAGCTCCGTGGAATGCCGACGATATC
TGTCAGCAATACACTAAAAACACCTTTTTCGAAAACGAAGATGATCCCAC
CTGCACCACTTTTATAACCTGTACAGTTGATAGCGACGGAACGCATTCGA
CAAAAGTCACTTCATGCAAGGCTAATCAGTATTTCAGTACCAGCTTAAAG
GTTTGTACCGCCACAAAGCCGGATGGATGCGTGGAGACGACAACCACTAT
AGCCACCACTACCCCAACCACCACCACCGTGACCACAACAGCGGCGAGTA
CCACCACAGCGGAACCCTGGAGTGCGGAGAAAACCTGCCTGACTGTCTCT
AAGACCACTTTGTTTCAAAACCAAGACGACCCCACCTGCACCACGTACCT
ATATTGTTATTTTATCAATGGATCGGCAACAGCTTTGATAAAGAACTGTA
AGACCAACCAATATTTTGATGCTTCCTTGAAATCGTGCAGCGAAAACAAA
CCGGATTATTGCACCGCAAGCTTTCTAGACCAT
BO30386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42494-RC | 852 | CG42494-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
CG42494-RB | 852 | CG42494-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
CG42494-RA | 852 | CG42494-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42494-RC | 1205 | CG42494-RC | 277..1125 | 17..865 | 4245 | 100 | Plus |
CG42494-RB | 1337 | CG42494-RB | 409..1257 | 17..865 | 4245 | 100 | Plus |
CG42494-RA | 937 | CG42494-RA | 9..857 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3185633..3185952 | 140..459 | 1600 | 100 | Plus |
3L | 28110227 | 3L | 3186012..3186299 | 460..747 | 1440 | 100 | Plus |
3L | 28110227 | 3L | 3186349..3186469 | 745..865 | 605 | 100 | Plus |
3L | 28110227 | 3L | 3185480..3185578 | 43..141 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:26 has no hits.
BO30386.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 16:01:06 Download gff for
BO30386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42494-RB | 409..1257 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:44 Download gff for
BO30386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42494-RA | 9..857 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:11 Download gff for
BO30386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42494-RA | 9..857 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:11 Download gff for
BO30386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3185396..3185422 | 17..43 | 100 | -> | Plus |
3L | 3185481..3185577 | 44..140 | 100 | -> | Plus |
3L | 3185634..3185952 | 141..459 | 100 | -> | Plus |
3L | 3186012..3186296 | 460..744 | 100 | -> | Plus |
3L | 3186349..3186469 | 745..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:44 Download gff for
BO30386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3186349..3186469 | 745..867 | 98 | | Plus |
arm_3L | 3185634..3185952 | 141..459 | 100 | -> | Plus |
arm_3L | 3185396..3185422 | 17..43 | 100 | -> | Plus |
arm_3L | 3185481..3185577 | 44..140 | 100 | -> | Plus |
arm_3L | 3186012..3186296 | 460..744 | 100 | -> | Plus |
BO30386.pep Sequence
Translation from 16 to 883
> BO30386.pep
MWLKALVLLLSIRYLAATCNVCQSDSNVACHSETTFSICYDGVPSYDLLP
CPKDFYCTDGFYTCYQNANPVCKTEEDTSTTEIQTTSTTTPSPITTTTTK
NPTTTATPITTTTTEITTTEAPWNADDICQQYTKNTFFENEDDPTCTTFI
TCTVDSDGTHSTKVTSCKANQYFSTSLKVCTATKPDGCVETTTTIATTTP
TTTTVTTTAASTTTAEPWSAEKTCLTVSKTTLFQNQDDPTCTTYLYCYFI
NGSATALIKNCKTNQYFDASLKSCSENKPDYCTASFLDH
BO30386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42494-PC | 283 | CG42494-PC | 1..283 | 1..283 | 1546 | 100 | Plus |
CG42494-PB | 283 | CG42494-PB | 1..283 | 1..283 | 1546 | 100 | Plus |
CG42494-PA | 283 | CG42494-PA | 1..283 | 1..283 | 1546 | 100 | Plus |
Muc96D-PA | 881 | CG31439-PA | 571..750 | 63..242 | 255 | 37.2 | Plus |
CG32284-PA | 102 | CG32284-PA | 28..97 | 215..284 | 236 | 55.7 | Plus |
CG32284-PA | 102 | CG32284-PA | 31..95 | 123..188 | 163 | 42.4 | Plus |