Clone BO30386 Report

Search the DGRC for BO30386

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:303
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG42494-RA
Protein status:BO30386.pep: Imported from assembly
Sequenced Size:883

Clone Sequence Records

BO30386.complete Sequence

883 bp assembled on 2011-09-27

GenBank Submission: KX797022

> BO30386.complete
GAAGTTATCAGTCGACATGTGGCTAAAGGCGCTTGTTCTACTGCTTTCGA
TTCGATATTTGGCGGCCACGTGCAATGTGTGTCAAAGTGATAGCAATGTC
GCTTGTCACAGTGAAACCACTTTTTCCATCTGCTATGACGGAGTTCCATC
GTATGATCTCTTGCCATGTCCAAAGGACTTTTATTGCACGGATGGCTTTT
ACACTTGCTATCAAAATGCTAATCCGGTTTGCAAAACAGAGGAGGACACT
TCCACCACCGAGATCCAGACAACCAGTACAACCACTCCTAGCCCCATTAC
CACGACAACCACTAAGAACCCAACTACCACTGCTACCCCAATTACCACAA
CAACCACTGAGATCACGACTACAGAAGCTCCGTGGAATGCCGACGATATC
TGTCAGCAATACACTAAAAACACCTTTTTCGAAAACGAAGATGATCCCAC
CTGCACCACTTTTATAACCTGTACAGTTGATAGCGACGGAACGCATTCGA
CAAAAGTCACTTCATGCAAGGCTAATCAGTATTTCAGTACCAGCTTAAAG
GTTTGTACCGCCACAAAGCCGGATGGATGCGTGGAGACGACAACCACTAT
AGCCACCACTACCCCAACCACCACCACCGTGACCACAACAGCGGCGAGTA
CCACCACAGCGGAACCCTGGAGTGCGGAGAAAACCTGCCTGACTGTCTCT
AAGACCACTTTGTTTCAAAACCAAGACGACCCCACCTGCACCACGTACCT
ATATTGTTATTTTATCAATGGATCGGCAACAGCTTTGATAAAGAACTGTA
AGACCAACCAATATTTTGATGCTTCCTTGAAATCGTGCAGCGAAAACAAA
CCGGATTATTGCACCGCAAGCTTTCTAGACCAT

BO30386.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42494-RC 852 CG42494-PC 1..849 17..865 4245 100 Plus
CG42494-RB 852 CG42494-PB 1..849 17..865 4245 100 Plus
CG42494-RA 852 CG42494-PA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG42494-RC 1205 CG42494-RC 277..1125 17..865 4245 100 Plus
CG42494-RB 1337 CG42494-RB 409..1257 17..865 4245 100 Plus
CG42494-RA 937 CG42494-RA 9..857 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3185633..3185952 140..459 1600 100 Plus
3L 28110227 3L 3186012..3186299 460..747 1440 100 Plus
3L 28110227 3L 3186349..3186469 745..865 605 100 Plus
3L 28110227 3L 3185480..3185578 43..141 495 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:06:26 has no hits.

BO30386.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 16:01:06 Download gff for BO30386.complete
Subject Subject Range Query Range Percent Splice Strand
CG42494-RB 409..1257 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:44 Download gff for BO30386.complete
Subject Subject Range Query Range Percent Splice Strand
CG42494-RA 9..857 17..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:11 Download gff for BO30386.complete
Subject Subject Range Query Range Percent Splice Strand
CG42494-RA 9..857 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:11 Download gff for BO30386.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3185396..3185422 17..43 100 -> Plus
3L 3185481..3185577 44..140 100 -> Plus
3L 3185634..3185952 141..459 100 -> Plus
3L 3186012..3186296 460..744 100 -> Plus
3L 3186349..3186469 745..867 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:44 Download gff for BO30386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3186349..3186469 745..867 98   Plus
arm_3L 3185634..3185952 141..459 100 -> Plus
arm_3L 3185396..3185422 17..43 100 -> Plus
arm_3L 3185481..3185577 44..140 100 -> Plus
arm_3L 3186012..3186296 460..744 100 -> Plus

BO30386.pep Sequence

Translation from 16 to 883

> BO30386.pep
MWLKALVLLLSIRYLAATCNVCQSDSNVACHSETTFSICYDGVPSYDLLP
CPKDFYCTDGFYTCYQNANPVCKTEEDTSTTEIQTTSTTTPSPITTTTTK
NPTTTATPITTTTTEITTTEAPWNADDICQQYTKNTFFENEDDPTCTTFI
TCTVDSDGTHSTKVTSCKANQYFSTSLKVCTATKPDGCVETTTTIATTTP
TTTTVTTTAASTTTAEPWSAEKTCLTVSKTTLFQNQDDPTCTTYLYCYFI
NGSATALIKNCKTNQYFDASLKSCSENKPDYCTASFLDH

BO30386.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG42494-PC 283 CG42494-PC 1..283 1..283 1546 100 Plus
CG42494-PB 283 CG42494-PB 1..283 1..283 1546 100 Plus
CG42494-PA 283 CG42494-PA 1..283 1..283 1546 100 Plus
Muc96D-PA 881 CG31439-PA 571..750 63..242 255 37.2 Plus
CG32284-PA 102 CG32284-PA 28..97 215..284 236 55.7 Plus
CG32284-PA 102 CG32284-PA 31..95 123..188 163 42.4 Plus