BO30389.complete Sequence
1597 bp assembled on 2013-09-16
GenBank Submission: KX799341
> BO30389.complete
GAAGTTATCAGTCGACATGGTCAAAACTGCCACCTTTTGGCGTTGCCTTT
TCTTTACATTATGTGGAAGCTTTTTGACGGTTACTCAGGCCAAAGCAACT
AGCAACGCAAGCAGTTTTTTGGAGGTGTCGCTGCGCTATTTTGATGAGCA
GCTTCTGCTGGACATCCTGCCACGCGCTCAGTGTCCTGGCGAGGATGAAG
GATCTCCGATGGACGAGTTCGCCGACCTGTTTACGGTGGATCAACTTCGC
CAGGGATGGGTGGTGCTGCACGTCTTCGCTGCGGTTTACTTCTTTATCCT
GCTGGCCATCATTTGCAACGACTACTTCCTGCCGACTGTGGAGTGCATCT
GCGAGGACTTGCACCTTTCGAAGGACGTGGCAGCGGCCACTTTCATGGCT
ACCGCCACCTCCATGCCCGAATTCTTTACGAACACGATCAGCACGTTGAT
TCTGGAGTCAGATATGGGCCTGGGCACGATTATCGGCTCGTTAATGTTCA
ACACATTGGGAGTGGCCGGCCTAGCTGCGCTCGCCATCGATAAGCCGGTG
CAACTGGACTGGTGGCCCATAGCTCGCGACTGCTTTATTTATGTCTTCAA
CACGATTATCCTGCTGGTCTTGGCCTGGAGTGGAAGCATTAGTTTCACTG
AGTCCTGCATCATGATGGGATTCCTCATCCTTTACTACCTTATCACGTTT
AACAACAACAAGTTTATGCCCGCCATCCGGGTGTTTATCGAGGATCGTAT
GAACTGCTGCTTCTCCACGCGATATGATCTAACGGAGCCTCCAGAGAACA
GTGCCAAGGCGCAGCTTCCACTCAAAAAAGATCCTCTGTCCGGCGATGGC
CTCTTTGTTCTTAATCTTCCCGAAAACACCTCGTCCATGTCTTCCACCGC
CAACCTCACACGTAACAAGCATCTTAACGACGAGGACGACGTCGCAGACG
TAGTGCCCGGGAGCATATACGCTTACCCGCGTGACGCATCCGGTTGGATG
CAATTCTGGTGGATCTTCGTCTTCCCCATTAAGGTCACGCTATCCCTATT
GATCCCGCACCCGATGAAGTACCGCCGACTGTACCCATTATCTTTTATCA
TGTGCATCTTGTGCATTGGCGGAAACGCCTACCTTATTGTCTGGATGCTG
ACTGCCTTTGGTGTGGCCATTCATGTGCCTACCATTGTGATGGGTCTGAC
CTTCTTGGCTGCTGGCTCTACCATGCCGGAAGCCGTCTCCAGTCTTATTT
CCCTTAGAAATGGGGAAAATGGCATTGGAGTTTCTAATTCGTTGGGCGCT
AACTCCTTGGCCATCTTGCTATCCCTTGGAGTGCCTTGGTTCATCAAGAA
TTGTATACACTACGGAACTGGGGAGCCCCAGCAGGTTGGCACCCAGGGCA
TCGAGTATAACATCCTGATCTTGATCATATCCACTATGGCGCTGTTCATA
ATCCTCAGCTTCAGTGGATATCGGCTTACGAAGCGAGTGGGCGTAGCCCT
CTTCACGGTGTACGGAGTCTTTATTGTTCTACAGATCCTCATCGAGATGA
ATGTATTCTTTCCCAGAGATTGCAGCAGCGCAAGCTTTCTAGACCAT
BO30389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RC | 1566 | CG17167-PC | 1..1563 | 17..1579 | 7800 | 99.9 | Plus |
| CG17167-RD | 1569 | CG17167-PD | 1..1566 | 17..1579 | 7735 | 99.7 | Plus |
| CG17167-RF | 1503 | CG17167-PF | 15..1500 | 94..1579 | 7415 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-RC | 2503 | CG17167-RC | 294..1860 | 13..1579 | 7805 | 99.9 | Plus |
| CG17167-RD | 2506 | CG17167-RD | 294..1863 | 13..1579 | 7740 | 99.7 | Plus |
| CG17167-RF | 2597 | CG17167-RF | 90..1575 | 94..1579 | 7415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23078770..23079109 | 924..1263 | 1700 | 100 | Plus |
| X | 23542271 | X | 23079805..23080122 | 1262..1579 | 1590 | 100 | Plus |
| X | 23542271 | X | 23074762..23075070 | 236..544 | 1545 | 100 | Plus |
| X | 23542271 | X | 23077856..23078089 | 543..776 | 1155 | 99.6 | Plus |
| X | 23542271 | X | 23078159..23078310 | 776..927 | 745 | 99.3 | Plus |
| X | 23542271 | X | 23073105..23073247 | 94..236 | 715 | 100 | Plus |
| X | 23542271 | X | 23068594..23068676 | 13..95 | 400 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:01:32 has no hits.
BO30389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:24 Download gff for
BO30389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RC | 298..1860 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:42 Download gff for
BO30389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17167-RC | 298..1860 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:42 Download gff for
BO30389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23068598..23068676 | 17..95 | 100 | -> | Plus |
| X | 23073107..23073247 | 96..236 | 100 | -> | Plus |
| X | 23077858..23078089 | 545..776 | 99 | -> | Plus |
| X | 23074763..23075070 | 237..544 | 100 | -> | Plus |
| X | 23078160..23078306 | 777..923 | 100 | -> | Plus |
| X | 23078770..23079108 | 924..1262 | 100 | -> | Plus |
| X | 23079806..23080122 | 1263..1581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:24 Download gff for
BO30389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 47416..47494 | 17..95 | 100 | -> | Plus |
| XHet | 51925..52065 | 96..236 | 100 | -> | Plus |
| XHet | 53581..53888 | 237..544 | 100 | -> | Plus |
| XHet | 56676..56907 | 545..776 | 99 | -> | Plus |
| XHet | 56978..57124 | 777..923 | 100 | -> | Plus |
| XHet | 57588..57926 | 924..1262 | 100 | -> | Plus |
| XHet | 58624..58940 | 1263..1581 | 99 | | Plus |
BO30389.pep Sequence
Translation from 16 to 1597
> BO30389.pep
MVKTATFWRCLFFTLCGSFLTVTQAKATSNASSFLEVSLRYFDEQLLLDI
LPRAQCPGEDEGSPMDEFADLFTVDQLRQGWVVLHVFAAVYFFILLAIIC
NDYFLPTVECICEDLHLSKDVAAATFMATATSMPEFFTNTISTLILESDM
GLGTIIGSLMFNTLGVAGLAALAIDKPVQLDWWPIARDCFIYVFNTIILL
VLAWSGSISFTESCIMMGFLILYYLITFNNNKFMPAIRVFIEDRMNCCFS
TRYDLTEPPENSAKAQLPLKKDPLSGDGLFVLNLPENTSSMSSTANLTRN
KHLNDEDDVADVVPGSIYAYPRDASGWMQFWWIFVFPIKVTLSLLIPHPM
KYRRLYPLSFIMCILCIGGNAYLIVWMLTAFGVAIHVPTIVMGLTFLAAG
STMPEAVSSLISLRNGENGIGVSNSLGANSLAILLSLGVPWFIKNCIHYG
TGEPQQVGTQGIEYNILILIISTMALFIILSFSGYRLTKRVGVALFTVYG
VFIVLQILIEMNVFFPRDCSSASFLDH
BO30389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17167-PC | 521 | CG17167-PC | 1..521 | 1..521 | 2714 | 100 | Plus |
| CG17167-PD | 522 | CG17167-PD | 1..522 | 1..521 | 2702 | 99.8 | Plus |
| CG17167-PF | 500 | CG17167-PF | 6..500 | 27..521 | 2573 | 100 | Plus |
| CG17167-PE | 409 | CG17167-PE | 1..303 | 1..302 | 1565 | 99.7 | Plus |
| zyd-PG | 499 | CG2893-PG | 11..489 | 65..515 | 776 | 35.4 | Plus |
| CG17167-PE | 409 | CG17167-PE | 285..409 | 403..521 | 541 | 88.8 | Plus |
