BO30390.complete Sequence
295 bp assembled on 2011-09-22
GenBank Submission: KX798558
> BO30390.complete
GAAGTTATCAGTCGACATGGTGCACTTTTTTGGATCGATTTTTCTGATGA
TGAGCAGTATCTTGATCGAATTTCTGGTGATCATCTATCTGGTAACAGAT
ATAATCCACCTGATCTTTTGTAGCCCCTTTATAATCAATTATGCGTTAAG
TTGTAGCTTCTGCACTCTAGAATCGATTCCTGTATTCTTCACCCTAGCTT
TTAGCCTTTATTTTTGGATAGTGGCATTTTTCTACTGGCGACGCCTTCTC
TGGGAACACAATCCCGAAAACGACGACGCAAGCTTTCTAGACCAT
BO30390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34300-RB | 264 | CG34300-PB | 1..261 | 17..277 | 1305 | 100 | Plus |
| CG34300-RA | 423 | CG34300-PA | 157..420 | 17..277 | 1240 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34300-RB | 635 | CG34300-RB | 164..424 | 17..277 | 1305 | 100 | Plus |
| CG34300-RA | 631 | CG34300-RA | 157..420 | 17..277 | 1240 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30306159..30306292 | 197..64 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 30306019..30306100 | 277..196 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 30306348..30306395 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:00:22 has no hits.
BO30390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:37 Download gff for
BO30390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 164..424 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:51 Download gff for
BO30390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 164..424 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:07 Download gff for
BO30390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34300-RB | 164..424 | 17..279 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:07 Download gff for
BO30390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30306016..30306098 | 198..279 | 97 | <- | Minus |
| 3R | 30306159..30306291 | 65..197 | 100 | <- | Minus |
| 3R | 30306348..30306395 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:51 Download gff for
BO30390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26131738..26131820 | 198..279 | 97 | <- | Minus |
| arm_3R | 26131881..26132013 | 65..197 | 100 | <- | Minus |
| arm_3R | 26132070..26132117 | 17..64 | 100 | | Minus |
BO30390.pep Sequence
Translation from 16 to 295
> BO30390.pep
MVHFFGSIFLMMSSILIEFLVIIYLVTDIIHLIFCSPFIINYALSCSFCT
LESIPVFFTLAFSLYFWIVAFFYWRRLLWEHNPENDDASFLDH
BO30390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34300-PB | 87 | CG34300-PB | 1..87 | 1..87 | 469 | 100 | Plus |
| CG34300-PA | 140 | CG34300-PA | 53..140 | 1..87 | 457 | 98.9 | Plus |
