BO30391.complete Sequence
3088 bp assembled on 2013-09-16
GenBank Submission: KX798832
> BO30391.complete
GAAGTTATCAGTCGACATGAAAGCGACCAGGAACGGCGGCCAGCTGCTCA
TCGCTCCTTCGCCGCAGACTGCTGCCCGTCTGCTGCCCCTGCGCACCTAC
TCCAACGCCTCCTCGCTGGGCCACCACCATGACAGGAGCACCCTGTCCGA
CGGCGACGAGGAGGAGGGCGGCCTTGGCTACACCCACACGCTGATGTATG
GTCGCTATACCAAAGATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAG
CTCAAAATACTCGAAAAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAA
GGAACTGCTGGGCAAACATTCGACCCGGGCGAAGCGGGTATCATCATGGA
TCTGGAGGCACACGGTGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCC
CTACTGGGCATCATTATGGCCCTGCTCTCGTTCATCATGGACAAGGGCAT
ATCCATATGTACAAACGCGCGAATTTGGCTGTATCGCGATCTGACGTCAC
AGCCTTTTGTTCAGTACATCGCATGGGTCTCACTGCCGGTCTGTTTGATA
TTGTTCTCAGCCGGCTTTGTCCATCTCATCGCACCGCAAAGTATAGGTTC
TGGTATACCCGAAATGAAGACCATACTGCGCGGCGTTCAATTGAAAGAGT
ATCTCACATTTAAGACACTAGTGGCCAAGGTAATTGGTTTAACGGCAACT
CTGGGCAGCGGTATGCCATTAGGAAAGGAAGGTCCTTTCGTACATATAGC
AAGTATTGTAGCACAATTATTAAGTAAACTTGTCACATCATTCCAAGGCA
TATATGAGAATGAGTCGCGAAACTCTGAAATGTTGGCGGCAGCCTGTGCT
GTCGGTGTGGGCGCCTGTTTTGCCGCTCCAGTCGGTGGTGTGCTCTTCAG
CATAGAGGTCACCACCACGTACTTCGCTGTGCGTAACTACTGGCGCGGAT
TCTTTGCGGCTGTGTGCGGCGCCACTGTCTTTCGGCTCCTGGCCGTTTGG
TTCCAAAACGCGGACACCGTCCGCGCCCTGTTCCTCACGAACTTCACCAC
CGAGTTTCCCTTCGATCCTCAGGAGCTGTTCGTCTTTGCTTTGATTGGAC
TTGTGTGCGGCTTGGGTGGCGCATCATATGTGTGGGTCCATCGGCGATAT
GTCCTCTTCATGAGATCCAACAAGCGGATGAACAAGTTCCTGCAGAAAAA
TCGCTTTTTGTATCCGGGATTCCTGGCTCTGCTGGTGTCCAGCATCTCGT
TTCCACTGGGCACGGGTCAGTTCCTGGCCGGCGAACTAAGTACCCACGAG
CAGGTGACACAGCTTTTTAGCAATTTCACGTGGTCACGAGATGATCTTAC
TGTGGAGCAGGCGGCTGTAGTGACCCACTGGATGACCAGTTACACCAGCG
TCTTTGGCAACCTTGTCATCTACACCCTCTTTACGTTTGTGGTCTCCATT
ATCGCATCCACGATACCAGTTCCGTCGGGCATGTTCATTCCGGTTTTCAA
GATCGGTGCTGGCTTTGGTCGTCTGGTGGGCGAGTTCATGGCGGTGACAT
TTCCCCACGGCGTCCGGTATGGCGGTCGTCTCTCGCCCATCATGCCCGGA
GGCTATGCCGTCGTCGGAGCGGCCGCCTTTTCTGGCTCCGTGACCCACAC
GGTGTCTGTGGCGGTGATCATTTTCGAGATGACTGGTCAGATTACGCACG
TGGTACCCGTCATGATTGCTGTGCTGGTGGCCAATGCCGTGGCGGCGCTG
CTCCAACCGTCGATATACGACAGTATTATATTGATTAAGAAGCTGCCCTA
CCTGCCGGATCTGCTGCCCTCCAGTTCCGGGATGTACAGCATATTCGTCG
AGGACTTTATGGTGCGGGATGTAAAGTACATATGGCACGGCATCTCGTAT
CAGAAGCTCAAAGAAGTCCTCAAGCTGAACAAGACGCTGAGATCCTTGCC
ACTGGTGGACAGCCCGGACAACATGATCCTGCTGGGTTCCGTGCAGCGGT
ACGAGCTGATCAAAATGATCGAGAAGCACATTGGACGCGAGAAGCGAATG
GAGGTGGCCCAGAAGTGGCAGAAGGAGGCTCAGGAAAGAGCCCTCGAGGA
GGAGAAGAAGAAACAGGAAGTGGAGCTCAAGATGCGGCGACCATCTCGAT
TCGAGGTCCTTCCAGCTCCGGATATTCTCAGTTTACGCCAGATTGCCAAC
GACGAAATGCTGCCGCCCAAGAAAAGGGCGGAGACAATGCACGGTTCGCT
GGCGCCCAGGAAGTCCATTTTGAAGAAGACCAACTCCTTCAACCTGAAGA
CCTACGCGCAGCCCATGGGGCACAGTCCCAGCATCACGCCCTACACCACG
ATCACCGGCAATTCCGAGTTCCGCATTCGCTCAGCCTTCGAGGCCATATT
TAAGAAGTCCACCACGCTCCAGGACGTACAGCCGGATCCGGAAACGGGTT
CCCTCTCCCCGGCGGCAAGCAACCACGAGGTGGAGGTGCCGCGAACTCCT
AGCACTCCCGGTGTTTCCAAAAAGGTTCAGCTGCCCAGGGAACGTGTTAT
TGACATGTCACCGGAGGATCAGAAGCAATGGGAGCTCGAGGAAATGTTGA
AGCCCATCGATTTGCAGAAGGCCAATGTCCACATCGATCCCTCGCCATTT
CAGCTGGTGGAACGCACCTCCATACTCAAGGTTCACTCGTTGTTTTCCAT
GGTGGGTATTAACCACGCCTATGTCACCAAAATCGGAAGACTTGTTGGTG
TCGTGGGACTCAAAGAATTGCGAAAAGCCATCGAGGACATTAATAGCAAT
AGTTTCGTGCCCCCCACACGGGATGAGGATGCGGATGAGAAGCCGGCGGT
GGAGAAACCTCTGCTGTCGACGAACTCTAGTGATAAGGCCGTGGACATGA
CCGTCACCTCCATGGACTCGGCACTATCCAATTCCGAGAACTGTTCGGAC
ATTGAAATGGAGCACATAAAGCACACGGATAAGGGCACTGTATCGCTCAC
CATGCCGCCACAGGAATCTAAGCAAAGTCCATCGGCGGACAAAAGTAACA
CAGAAAACGGAAATCATGCTGCAAGCTTTCTAGACCAT
BO30391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-RG | 3057 | CG31116-PG | 1..3054 | 17..3070 | 15270 | 100 | Plus |
| ClC-a-RF | 3201 | CG31116-PF | 322..3198 | 194..3070 | 14385 | 100 | Plus |
| ClC-a-RC | 3150 | CG31116-PC | 271..3147 | 194..3070 | 14385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-RG | 4031 | CG31116-RG | 777..3830 | 17..3070 | 15270 | 100 | Plus |
| ClC-a-RI | 4082 | CG31116-RI | 809..3881 | 17..3070 | 15045 | 99.4 | Plus |
| ClC-a-RF | 3613 | CG31116-RF | 536..3412 | 194..3070 | 14385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11798991..11800089 | 2533..1435 | 5495 | 100 | Minus |
| 3R | 32079331 | 3R | 11797445..11797747 | 3070..2768 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 11797806..11798040 | 2767..2533 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 11800141..11800375 | 1435..1201 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 11800592..11800803 | 1098..887 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 11810364..11810540 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 11802170..11802337 | 467..300 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 11800870..11801028 | 889..731 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 11801159..11801296 | 731..594 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 11801950..11802081 | 598..467 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 11802583..11802696 | 302..189 | 555 | 99.1 | Minus |
| 3R | 32079331 | 3R | 11800438..11800540 | 1200..1098 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:01:39 has no hits.
BO30391.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:26 Download gff for
BO30391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RG | 777..3830 | 17..3072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:44 Download gff for
BO30391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RG | 777..3830 | 17..3072 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:44 Download gff for
BO30391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11800438..11800539 | 1099..1200 | 100 | <- | Minus |
| 3R | 11801952..11802080 | 468..596 | 100 | <- | Minus |
| 3R | 11800592..11800802 | 888..1098 | 100 | <- | Minus |
| 3R | 11800872..11801028 | 731..887 | 100 | <- | Minus |
| 3R | 11801160..11801293 | 597..730 | 100 | <- | Minus |
| 3R | 11797442..11797747 | 2768..3072 | 99 | <- | Minus |
| 3R | 11797806..11798039 | 2534..2767 | 100 | <- | Minus |
| 3R | 11798991..11800088 | 1436..2533 | 100 | <- | Minus |
| 3R | 11800141..11800375 | 1201..1435 | 100 | <- | Minus |
| 3R | 11802170..11802335 | 302..467 | 100 | <- | Minus |
| 3R | 11802584..11802691 | 194..301 | 100 | <- | Minus |
| 3R | 11810364..11810540 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:26 Download gff for
BO30391.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7626160..7626261 | 1099..1200 | 100 | <- | Minus |
| arm_3R | 7623164..7623469 | 2768..3072 | 99 | <- | Minus |
| arm_3R | 7623528..7623761 | 2534..2767 | 100 | <- | Minus |
| arm_3R | 7625863..7626097 | 1201..1435 | 100 | <- | Minus |
| arm_3R | 7624713..7625810 | 1436..2533 | 100 | <- | Minus |
| arm_3R | 7626314..7626524 | 888..1098 | 100 | <- | Minus |
| arm_3R | 7626594..7626750 | 731..887 | 100 | <- | Minus |
| arm_3R | 7626882..7627015 | 597..730 | 100 | <- | Minus |
| arm_3R | 7627674..7627802 | 468..596 | 100 | <- | Minus |
| arm_3R | 7627892..7628057 | 302..467 | 100 | <- | Minus |
| arm_3R | 7628306..7628413 | 194..301 | 100 | <- | Minus |
| arm_3R | 7636086..7636262 | 17..193 | 100 | | Minus |
BO30391.pep Sequence
Translation from 16 to 3088
> BO30391.pep
MKATRNGGQLLIAPSPQTAARLLPLRTYSNASSLGHHHDRSTLSDGDEEE
GGLGYTHTLMYGRYTKDLGEFAKDEARKLKILEKRRKQEDKQRNKELLGK
HSTRAKRVSSWIWRHTVARLGEDWVFLALLGIIMALLSFIMDKGISICTN
ARIWLYRDLTSQPFVQYIAWVSLPVCLILFSAGFVHLIAPQSIGSGIPEM
KTILRGVQLKEYLTFKTLVAKVIGLTATLGSGMPLGKEGPFVHIASIVAQ
LLSKLVTSFQGIYENESRNSEMLAAACAVGVGACFAAPVGGVLFSIEVTT
TYFAVRNYWRGFFAAVCGATVFRLLAVWFQNADTVRALFLTNFTTEFPFD
PQELFVFALIGLVCGLGGASYVWVHRRYVLFMRSNKRMNKFLQKNRFLYP
GFLALLVSSISFPLGTGQFLAGELSTHEQVTQLFSNFTWSRDDLTVEQAA
VVTHWMTSYTSVFGNLVIYTLFTFVVSIIASTIPVPSGMFIPVFKIGAGF
GRLVGEFMAVTFPHGVRYGGRLSPIMPGGYAVVGAAAFSGSVTHTVSVAV
IIFEMTGQITHVVPVMIAVLVANAVAALLQPSIYDSIILIKKLPYLPDLL
PSSSGMYSIFVEDFMVRDVKYIWHGISYQKLKEVLKLNKTLRSLPLVDSP
DNMILLGSVQRYELIKMIEKHIGREKRMEVAQKWQKEAQERALEEEKKKQ
EVELKMRRPSRFEVLPAPDILSLRQIANDEMLPPKKRAETMHGSLAPRKS
ILKKTNSFNLKTYAQPMGHSPSITPYTTITGNSEFRIRSAFEAIFKKSTT
LQDVQPDPETGSLSPAASNHEVEVPRTPSTPGVSKKVQLPRERVIDMSPE
DQKQWELEEMLKPIDLQKANVHIDPSPFQLVERTSILKVHSLFSMVGINH
AYVTKIGRLVGVVGLKELRKAIEDINSNSFVPPTRDEDADEKPAVEKPLL
STNSSDKAVDMTVTSMDSALSNSENCSDIEMEHIKHTDKGTVSLTMPPQE
SKQSPSADKSNTENGNHAASFLDH
BO30391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-PG | 1018 | CG31116-PG | 1..1018 | 1..1018 | 5212 | 100 | Plus |
| ClC-a-PF | 1066 | CG31116-PF | 92..1066 | 44..1018 | 4939 | 99 | Plus |
| ClC-a-PC | 1049 | CG31116-PC | 91..1049 | 60..1018 | 4904 | 100 | Plus |
| ClC-a-PH | 1145 | CG31116-PH | 1..842 | 1..842 | 4304 | 99.8 | Plus |
| ClC-a-PD | 1193 | CG31116-PD | 92..890 | 44..842 | 4031 | 98.5 | Plus |
| ClC-a-PH | 1145 | CG31116-PH | 962..1145 | 835..1018 | 930 | 98.9 | Plus |
