BO30394.complete Sequence
925 bp assembled on 2011-09-27
GenBank Submission: KX797934
> BO30394.complete
GAAGTTATCAGTCGACATGGGCGCCGTGCAGCCAGGAGGAGTTGTGACCG
TTGACAACACCTGGGTGCACTCGTCTCCATACAGCCCCCTGCCCCCATAC
GCGGTTATCGGTGGCCATGACTCGGACCGCACGCCCATCTATGTGGGTCG
ATCCTTTCACGAAGGCGAGAATCTTCCCGCCAAGGTCGTACCGAGCAAGG
GATGCGCCTATGTGGCCTACGGTGGTGCGGAGCACACGAAGACGCACTAC
GAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTGCCCAGTTCCAGCGGTGG
AGTGCCACCGAATGCGGTGAGGAGCGGAACGACGCGAACGGGCGAGCCGC
TCTATGTGGGACGCGGACATCATGCCGGAAGCTTGACTGTGGGCAAAGTT
CATCCATCGCACGGCTGCCTATACATTCCATTTGGCGGCCAGGAGGTGCG
CATCAACACCTACGAGGTGCTCATCAAGCAGCAGCACGACGTCTGGGTAC
CGGCCTCGCCCAGTTACACTCCTCCGGGCGCAGTGATCGCCGGACACGAC
TCCGACCGTACTCCCATTTACGCCGGAAGGGCAATGCACGAGGGTGAAAT
GCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAACCGCCTACGTTTGCTTCG
GCGGATACGAATTCCAGAAGCCCAGCTACGAGGTGCTCACTGGCTACGGA
TATGTATGGATGAATTGCGGCCACAGCATTCCACCAAACGCCGTAACCAC
GGGTCGTGCTCGCAATGGAGAGCTGCTGTACTATGGGCGAGGACACTACC
AGGGCAGTTTGACACCGGGTCTGATCTCGGCCAGCCAGCGTTGCCTCTAT
ATTCCGTACGGAGGTCGGGAGATTCGCATCAACTCGTACGAGATTCTCTG
CAGACAAGCAAGCTTTCTAGACCAT
BO30394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RC | 894 | CG44250-PC | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG44250-RB | 861 | CG44250-PB | 4..858 | 53..907 | 4275 | 100 | Plus |
| CG32633-RB | 858 | CG32633-PB | 754..824 | 380..450 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RC | 1100 | CG44250-RC | 118..1008 | 17..907 | 4455 | 100 | Plus |
| CG44250-RB | 1067 | CG44250-RB | 121..975 | 53..907 | 4275 | 100 | Plus |
| CG32633-RB | 956 | CG32633-RB | 794..864 | 380..450 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12950496..12951350 | 907..53 | 4275 | 100 | Minus |
| X | 23542271 | X | 13562712..13562782 | 380..450 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:59 has no hits.
BO30394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 16:01:06 Download gff for
BO30394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RC | 111..1001 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:50 Download gff for
BO30394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 118..1008 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:26 Download gff for
BO30394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 118..1008 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:26 Download gff for
BO30394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12950494..12951349 | 54..909 | 99 | <- | Minus |
| 2R | 12951846..12951880 | 17..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:50 Download gff for
BO30394.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8837999..8838854 | 54..909 | 99 | <- | Minus |
| arm_2R | 8839351..8839385 | 17..53 | 94 | | Minus |
BO30394.pep Sequence
Translation from 16 to 925
> BO30394.pep
MGAVQPGGVVTVDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEG
ENLPAKVVPSKGCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNA
VRSGTTRTGEPLYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYE
VLIKQQHDVWVPASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKV
VPSKGTAYVCFGGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARN
GELLYYGRGHYQGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQASF
LDH
BO30394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-PC | 297 | CG44250-PC | 1..297 | 1..297 | 1633 | 100 | Plus |
| CG44250-PB | 286 | CG44250-PB | 1..286 | 12..297 | 1574 | 99.7 | Plus |
| CG13321-PB | 286 | CG13321-PB | 3..285 | 13..296 | 878 | 56.5 | Plus |
| CG13321-PA | 286 | CG13321-PA | 3..285 | 13..296 | 878 | 56.5 | Plus |
| CG32633-PB | 285 | CG32633-PB | 3..284 | 13..296 | 734 | 49.8 | Plus |
| CG13321-PB | 286 | CG13321-PB | 16..149 | 169..301 | 402 | 54.5 | Plus |
| CG13321-PA | 286 | CG13321-PA | 16..149 | 169..301 | 402 | 54.5 | Plus |
