BO30396.complete Sequence
2020 bp assembled on 2013-10-11
GenBank Submission: KX799535
> BO30396.complete
GAAGTTATCAGTCGACATGTTCGCGGGAATAAGGAAACGCCTGGCACGCA
AGCAAAACGAGAAGGACTGCGATGAGGACGACAAGGAGGATGTGCTCGAT
AGTATGCCACCACCTCCGAATTACATACAGATCTCGCAGGGCAGGATTCA
GTTGGTCCACCAGCCGAGAACGCCCGTTGAATCGGAGGCGGGAACTCTGT
CCCTGGAGCGGCACGGGGGCTCGATCTCCGGATCCGGCGGCTGTGATAAG
GATGTGTTGGAGAAGCGGATGATTGAAGTTGAAGGCGCTCTGCTGCGTTT
GCAGGAGCAGTTCCAGAAAAGCCAATGCGGGTCGCCTACGTTCGAGAAGG
AATTGCGCGAACAAATTGAGAACATGAATCGCATTATGAAATCCAAAGAA
CGCAAGCAAATGCAGACATGTCGGGATCACAAGGCACTGCAGACGCGCTT
TGCCCGACAGGAGAGCCTGCTCCAATCGATGCAGCAGGAGAATCGATCCT
TGCTCACACGAATCCGTCAGTATGAGCACTGCCTGGATGATGTGATGCGC
AAGGTGGTGGACGCCATTGTGGCAGAAGATAATCTCCGTGAGGAGGTGAG
CATGCTGAAGGGCCGGGTTCGAGATCTGGAGGCGCAAAATGCTGCTCTGT
CCGCCAGTCCGGTGAAGGGCAGGGATGAAGGCTACTGCACCATGAGCAGT
GGGCAGCCGCAGCCGTCGAATGGGCATCTGGAAGATCTGCCCGAGGAACC
GGAACAGTGGCTCTTGCCTGCCGAACCCTGCTCCACAGAAATGGAGGACT
GGAGCATGTCGCAGGAGGAACTGGCAGTGATGACGTTCGACGACGAGCGG
GATCCACATCACCCTCATCTCCAGCAGCAGCGGAGGAAGAGGGATCACGA
CTGGCTGTGGCCATCGAGCGACTTTATTAACTCCACCACCGTGGAAACGG
ATTCAGTGGCCGATGGCATTACCCAGCTGCTGCAGCAGAAGATTGTCTAC
TCCGAGGACGAGGAGGTGGCCTGCACGGACTTTACCAACGACTTCTACAA
ACTGGTTAACATCCGTTCGAATTCCTCGCGCAGTCTTTACTCATATTTAG
AGGGTGAGACGGATGACGAGGATGAGGACGACGACGATGGGGAGGATTCC
AGTATCTCAGAGAGCCAGGTGGGTCCCGCTGGCAGAATCAGTCCCACGCC
CAGTGAGGCGGGAAGGGCCCAGTTGACCAGCTGCTCCTCAAGCGAAACAG
ACGAACTTTCCGCCAGCCAGGCTAAGAAGGATGAGGAACCGGACTACGCG
GTTATCGACGAGTGCCGGCGGAGGGTTAGCGACATTGAAATTGAGGATGT
GCCCATGATTGTCAGCAGCACGCCAATGAAACCACTGGATGAGCAGCAGT
GTATTGCTCAGATCATCAAGAGTGAACTACGTCGACCGCCGCACGTCCTG
GTGAAATCGAAATCGGTGCTAGAAGACCAGGAACCCAGTTGCATCCTCAG
ACACAATCAACGCCGCGAACTGGAGTCCACCGTGGTGTGTAGCGATAGCA
TCAGCTGTGCCATGATGAACAAGTTGGCCAAAGAGGTGGTGCCACCGGCG
CCTGGAATGGTTACCAAGCTGAAGGAGCGGATGCTGCTGAGACAGGCTTC
CACGCCTCCGACGGCCAGCTCCTGGCGCAGGAGCAATGGCTGGAAGAGGG
TAACATCACCGGTTCATCCACCGGTGGCTGTCTCGCCCAAAAAGAAGGCA
GCGAAGTCAACGGAGCCGCCAAAGAGTTGCCTGCCCAAGGCGCAGCCCAC
CAGAATTCCAACGAGCATCCATTCGTCGGTGTCCTCGTCCTCCTCGATGT
CCTCCTCCTGCTCGCCCTCGCCCTCCTCCCCCTCGCCGCAATCGCCACAG
CAAAGGTCACCGGGTCAGCAGACACAGCAACAACAGCAACAGCAGCAGCA
GCGAAAATCGAAGATTCCTCCACCAGTTCCCGTGCGAAGATCCTACGCCA
GTGCAAGCTTTCTAGACCAT
BO30396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RB | 1989 | CG42663-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| CG42663-RD | 1986 | CG42663-PD | 1..1983 | 17..2002 | 9850 | 99.8 | Plus |
| CG42663-RC | 1920 | CG42663-PC | 235..1917 | 320..2002 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-RB | 4068 | CG42663-RB | 1133..3118 | 17..2002 | 9930 | 100 | Plus |
| CG42663-RD | 4065 | CG42663-RD | 1133..3115 | 17..2002 | 9850 | 99.8 | Plus |
| CG42663-RC | 3999 | CG42663-RC | 1367..3049 | 320..2002 | 8415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12749521..12750275 | 990..1744 | 3775 | 100 | Plus |
| 2R | 25286936 | 2R | 12748908..12749461 | 438..991 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 12750336..12750595 | 1743..2002 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 12734917..12735120 | 48..251 | 1005 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12738434..12738504 | 249..319 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 12747678..12747747 | 373..442 | 350 | 100 | Plus |
| 2R | 25286936 | 2R | 12746609..12746661 | 320..372 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:05:58 has no hits.
BO30396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-11 17:01:36 Download gff for
BO30396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RB | 1138..3118 | 22..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:14 Download gff for
BO30396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42663-RB | 1138..3118 | 22..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:14 Download gff for
BO30396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12750338..12750595 | 1745..2004 | 99 | | Plus |
| 2R | 12722977..12723006 | 22..51 | 100 | -> | Plus |
| 2R | 12734921..12735119 | 52..250 | 100 | -> | Plus |
| 2R | 12738436..12738504 | 251..319 | 100 | -> | Plus |
| 2R | 12746609..12746661 | 320..372 | 100 | -> | Plus |
| 2R | 12747678..12747747 | 373..442 | 100 | -> | Plus |
| 2R | 12748913..12749461 | 443..991 | 100 | -> | Plus |
| 2R | 12749523..12750275 | 992..1744 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-11 17:01:36 Download gff for
BO30396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8637028..8637780 | 992..1744 | 100 | -> | Plus |
| arm_2R | 8637843..8638100 | 1745..2004 | 99 | | Plus |
| arm_2R | 8610482..8610511 | 22..51 | 100 | -> | Plus |
| arm_2R | 8622426..8622624 | 52..250 | 100 | -> | Plus |
| arm_2R | 8625941..8626009 | 251..319 | 100 | -> | Plus |
| arm_2R | 8634114..8634166 | 320..372 | 100 | -> | Plus |
| arm_2R | 8635183..8635252 | 373..442 | 100 | -> | Plus |
| arm_2R | 8636418..8636966 | 443..991 | 100 | -> | Plus |
BO30396.pep Sequence
Translation from 16 to 2020
> BO30396.pep
MFAGIRKRLARKQNEKDCDEDDKEDVLDSMPPPPNYIQISQGRIQLVHQP
RTPVESEAGTLSLERHGGSISGSGGCDKDVLEKRMIEVEGALLRLQEQFQ
KSQCGSPTFEKELREQIENMNRIMKSKERKQMQTCRDHKALQTRFARQES
LLQSMQQENRSLLTRIRQYEHCLDDVMRKVVDAIVAEDNLREEVSMLKGR
VRDLEAQNAALSASPVKGRDEGYCTMSSGQPQPSNGHLEDLPEEPEQWLL
PAEPCSTEMEDWSMSQEELAVMTFDDERDPHHPHLQQQRRKRDHDWLWPS
SDFINSTTVETDSVADGITQLLQQKIVYSEDEEVACTDFTNDFYKLVNIR
SNSSRSLYSYLEGETDDEDEDDDDGEDSSISESQVGPAGRISPTPSEAGR
AQLTSCSSSETDELSASQAKKDEEPDYAVIDECRRRVSDIEIEDVPMIVS
STPMKPLDEQQCIAQIIKSELRRPPHVLVKSKSVLEDQEPSCILRHNQRR
ELESTVVCSDSISCAMMNKLAKEVVPPAPGMVTKLKERMLLRQASTPPTA
SSWRRSNGWKRVTSPVHPPVAVSPKKKAAKSTEPPKSCLPKAQPTRIPTS
IHSSVSSSSSMSSSCSPSPSSPSPQSPQQRSPGQQTQQQQQQQQQRKSKI
PPPVPVRRSYASASFLDH
BO30396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42663-PB | 662 | CG42663-PB | 1..662 | 1..662 | 3433 | 100 | Plus |
| CG42663-PD | 661 | CG42663-PD | 1..661 | 1..662 | 3416 | 99.8 | Plus |
| CG42663-PC | 639 | CG42663-PC | 1..639 | 1..662 | 3289 | 96.5 | Plus |
