BO30422.complete Sequence
1090 bp assembled on 2011-09-22
GenBank Submission: KX798739
> BO30422.complete
GAAGTTATCAGTCGACATGTTCCTACAATGTCCTTCGGTGATGCGAGGTT
CTAAACACTTTTCTCAGCACATGAGCGATTTCAGTTCTGGAAGCCATCAG
AACACGGACAATTTCAGCGATTGTTGGTTGGAATCCAATAGTAGTCAGGA
TTCGTATTTCGGTCAATCTAGTCGACTGAAACTTGCCCTCCTGGATTACA
AACAGTTCAACGCTGCAAGGACTATTCAGTGTCATGTGAGGGGATTTTTG
GCCAGAAGTACTCTTAAAAGGCAGATCGATGCTGCCACCATCATTAGCAA
GTGGTGGCGTGGTTTCTGGGTGCGACACTCAAAGTTCTCCTTTATGCAAC
AGCTGTTACAGCAGAGGATCATCCAGTATCACCACGATATGGCCACTAAG
ATTCAGGCGCTGTTCCGCGGATGGATGACTCGCCAGTACTTCCAGGACTT
CCAGGGCATGAAGTCGCTCCGAATACAGTATGTGGAAGATATGCTCAGTT
CGCTTTACAGAAAGGTCCACAGAATGCGAAAGGAACATATGCTACCAGGA
ATTTATGCATTAAGGGAATCTGATCTGCTAAGTAAGATCGAGGACCTTTC
TAGTACCTTTGGCTACCGCTTTCATAACGGCCGTGTGCGGGCAGCCATTG
CAATGAAGCGATCCTTCATAAACGACCGGCGACATGAGTTCCGAAAGGGA
AATACTTATTCCAAAGTGCCTTATCCGGGACCCTATATAGAAAACATTAA
CGACTTAGAATTTACCTTGCCAAAGCGAATGACACCACGTTTGCAGCGTA
CGATTCTGGTATATGACAAGGCAATGAGAGATAAGAATGTGGAGAAGGTG
TACATGAACTATTCAACCAAACGTCGTATGAGCATGCATGTCATGCGAGA
GAATATGCGAAATCGTTTTTGCAAAGATTTTGTAAAGCGTTTGGCAAAAA
GGAACAAGACACGAAACGCACAGGATCGTAACATTAAATACTATCTTGAT
GATCTTCTAACGACCGCTGATGAATATAATTGTTTTTGCAAGCCCCAAGT
AAAAGACGATAGCTTGTGCCAAGCAAGCTTTCTAGACCAT
BO30422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1059 | CG12448-PC | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1293 | CG12448-RC | 65..1121 | 16..1072 | 5285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15941505..15942062 | 16..573 | 2790 | 100 | Plus |
| 2L | 23513712 | 2L | 15942125..15942420 | 574..869 | 1480 | 100 | Plus |
| 2L | 23513712 | 2L | 15942480..15942682 | 870..1072 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:33 has no hits.
BO30422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:28 Download gff for
BO30422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1121 | 22..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:52 Download gff for
BO30422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1121 | 22..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:28 Download gff for
BO30422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 71..1121 | 22..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:28 Download gff for
BO30422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15941511..15942062 | 22..573 | 100 | -> | Plus |
| 2L | 15942125..15942420 | 574..869 | 100 | -> | Plus |
| 2L | 15942480..15942682 | 870..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:52 Download gff for
BO30422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15941511..15942062 | 22..573 | 100 | -> | Plus |
| arm_2L | 15942125..15942420 | 574..869 | 100 | -> | Plus |
| arm_2L | 15942480..15942682 | 870..1074 | 99 | | Plus |
BO30422.pep Sequence
Translation from 16 to 1090
> BO30422.pep
MFLQCPSVMRGSKHFSQHMSDFSSGSHQNTDNFSDCWLESNSSQDSYFGQ
SSRLKLALLDYKQFNAARTIQCHVRGFLARSTLKRQIDAATIISKWWRGF
WVRHSKFSFMQQLLQQRIIQYHHDMATKIQALFRGWMTRQYFQDFQGMKS
LRIQYVEDMLSSLYRKVHRMRKEHMLPGIYALRESDLLSKIEDLSSTFGY
RFHNGRVRAAIAMKRSFINDRRHEFRKGNTYSKVPYPGPYIENINDLEFT
LPKRMTPRLQRTILVYDKAMRDKNVEKVYMNYSTKRRMSMHVMRENMRNR
FCKDFVKRLAKRNKTRNAQDRNIKYYLDDLLTTADEYNCFCKPQVKDDSL
CQASFLDH
BO30422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-PC | 352 | CG12448-PC | 1..352 | 1..352 | 1873 | 100 | Plus |
| CG13544-PA | 367 | CG13544-PA | 34..366 | 40..351 | 428 | 30.4 | Plus |
| CG18063-PD | 371 | CG18063-PD | 44..306 | 52..309 | 374 | 31.2 | Plus |
| CG18063-PE | 372 | CG18063-PE | 45..307 | 52..309 | 374 | 31.2 | Plus |
| CG18063-PC | 372 | CG18063-PC | 45..307 | 52..309 | 374 | 31.2 | Plus |
