Clone BO30423 Report

Search the DGRC for BO30423

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:304
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG16997-RB
Protein status:BO30423.pep: Imported from assembly
Sequenced Size:829

Clone Sequence Records

BO30423.complete Sequence

829 bp assembled on 2011-09-22

GenBank Submission: KX796108

> BO30423.complete
GAAGTTATCAGTCGACATGTGGCGCCATCGCCACCTGGCCACTATCCTCC
TGCTGGCGGTGTGCGTTTCCCAAGGATCTGGATTAGCCTTGGACCAACCC
GAAGGACGCGTTGTGGGTGGAAAAGCGGCGGCGGCCAATAGTGCTCCGTA
TATAGTGTCCATGCAGTACGGAGGAACTCACTATTGCGCCGCTAACATCA
TTAATTCCAACTGGCTGGTAACGGCTGCTCACTGCCTGGCCAATAGGAAT
CAAGTACTTGGAAGCACCCTGGTGGCTGGAAGCATTGCGGTGGCCGGAAC
AGCGAGCACAACACAGAAGAGGCAAATCACCCACTATGTGATCAATGATC
TTTATACCGGCGGAACTGTGCCCTATGACATCGGATTGATTTACACGCCC
ACCGCCTTCACTTGGACCGCTGCAGTGGCTCCGGTGAAGCTGCCATCGTC
CGGCGTGAGGCCAACTGGAAAGGCTGACCTCTTTGGCTGGGGCAGTACTA
GCAAAACGAATAGCCCCTCATATCCGAAAACCCTCCAGGAGGCGAAGAAC
ATACCCATCATAAGCCTCGACTCCTGCGCTGCGGCACTTGGCTCTAAGGG
TCAGGATGTGCACACCACGAACCTGTGCACAGGTCCTCTCACCGGCGGCA
CCAGCTTTTGCACCTCGGACTCCGGTGGTCCGCTGGTCCAGGGAAACGTT
CTAATCGGCATCGTGTCTTGGGGAAAACTTCCATGTGGTCAGCCCAACTC
TCCGTCGGTGTATGTCCAGGTCTCCTCGTTCATAACATGGATAGCAGCCA
ACCAAAAGAAAGCAAGCTTTCTAGACCAT

BO30423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-RC 798 CG16997-PC 1..795 17..811 3975 100 Plus
Phae2-RB 798 CG16997-PB 1..795 17..811 3975 100 Plus
Phae1-RB 813 CG16996-PB 93..800 97..804 1065 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-RC 1147 CG16997-RC 38..833 16..811 3980 100 Plus
Phae2-RB 886 CG16997-RB 38..833 16..811 3980 100 Plus
Phae1-RB 1248 CG16996-RB 319..1026 97..804 1065 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12111147..12111942 16..811 3980 100 Plus
2L 23513712 2L 12109735..12110442 97..804 1065 76.7 Plus
Blast to na_te.dros performed on 2014-11-27 07:46:48 has no hits.

BO30423.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:29 Download gff for BO30423.complete
Subject Subject Range Query Range Percent Splice Strand
CG16997-RB 16..810 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:56 Download gff for BO30423.complete
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 39..833 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:33 Download gff for BO30423.complete
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 39..833 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:33 Download gff for BO30423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12111148..12111942 17..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:56 Download gff for BO30423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12111148..12111942 17..813 99   Plus

BO30423.pep Sequence

Translation from 16 to 829

> BO30423.pep
MWRHRHLATILLLAVCVSQGSGLALDQPEGRVVGGKAAAANSAPYIVSMQ
YGGTHYCAANIINSNWLVTAAHCLANRNQVLGSTLVAGSIAVAGTASTTQ
KRQITHYVINDLYTGGTVPYDIGLIYTPTAFTWTAAVAPVKLPSSGVRPT
GKADLFGWGSTSKTNSPSYPKTLQEAKNIPIISLDSCAAALGSKGQDVHT
TNLCTGPLTGGTSFCTSDSGGPLVQGNVLIGIVSWGKLPCGQPNSPSVYV
QVSSFITWIAANQKKASFLDH

BO30423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-PC 265 CG16997-PC 1..265 1..265 1395 100 Plus
Phae2-PB 265 CG16997-PB 1..265 1..265 1395 100 Plus
Phae1-PB 270 CG16996-PB 9..268 5..264 1082 78.5 Plus
Phae1-PA 270 CG16996-PA 9..268 5..264 1082 78.5 Plus
CG7142-PA 334 CG7142-PA 84..323 36..259 597 49.4 Plus