BO30458.complete Sequence
730 bp assembled on 2011-09-22
GenBank Submission: KX796446
> BO30458.complete
GAAGTTATCAGTCGACATGTCGAGACTCACCGAGGAAATGGTGATAGCGC
GGGCCAAGCAATCCGATTTGTCCCTGATCAAAAAGCTAAATTGCTGGGGC
AGTGATCTCAGCGATGTGTCCATCATCAAGCGAATGCGTGGAGTGGAAGT
TCTGGCTCTTAGTGTCAACAAGATCAGCACGCTGTCGACCTTCGAGGATT
GCACCAAACTGCAGGAGCTATATTTGCGCAAGAACAGCATCTCTGACATC
AACGAGATCGCCTACCTACAAAATCTTCCGAGTCTCAGGAATCTCTGGCT
GGAGGAAAATCCCTGCTGCGAACGAGCGGGTCCCAACTATCGTTCGATCG
TATTACGCGCCCTGCCGAACCTCAAGAAACTCGACAATGTTGAGGTCACA
CAGCAGGAGGTGGAGGATGCGCTGCGTGGAGGCGGAGTCGCCGCACCCGA
GGACGAGGTCTACGAGGATGCATACCAGCAACAGCAGCAGTCGAGGCGAT
CATCGCCGCAGCAGATACTGCAGCAGCAGCAACACAGCTACCCGCAACAC
TCGCCGCCGCCGCAGCAGCAATATCAGCAGCAGCAACAGCAGCAGCAGCA
GCAGCAGCGCGGCTGCACCACTCCCACGAAAGAGGTAAGTGGCTGCCATT
GTCTGTGTGGATTTTCACACACCACGCCCCGGTTTAGCTGCTATAATCTC
TTGCCTTGGCAAGCAAGCTTTCTAGACCAT
BO30458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-RF | 699 | CG14995-PF | 1..696 | 17..712 | 3480 | 100 | Plus |
| CG14995-RI | 1260 | CG14995-PI | 1..619 | 17..635 | 3095 | 100 | Plus |
| CG14995-RG | 1089 | CG14995-PG | 1..619 | 17..635 | 3095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-RF | 3344 | CG14995-RF | 1142..1837 | 17..712 | 3480 | 100 | Plus |
| CG14995-RI | 3067 | CG14995-RI | 1142..1760 | 17..635 | 3095 | 100 | Plus |
| CG14995-RG | 3229 | CG14995-RG | 1636..2254 | 17..635 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4097429..4097804 | 712..337 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 4098026..4098201 | 336..161 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4101476..4101556 | 97..17 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 4100780..4100846 | 162..96 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6865 | 459..607 | 303 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2469 | 474..608 | 272 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6938 | 474..608 | 269 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2442 | 474..608 | 242 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6900 | 474..606 | 242 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2514 | 474..608 | 230 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2530 | 474..629 | 211 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2965 | 474..620 | 204 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2889 | 473..605 | 199 | 66.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1149 | 474..549 | 136 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..6956 | 474..596 | 130 | 59.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1157 | 474..541 | 108 | 63.8 | Plus |
BO30458.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:32 Download gff for
BO30458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1142..1837 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:51 Download gff for
BO30458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1142..1837 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:16 Download gff for
BO30458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1142..1837 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:16 Download gff for
BO30458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4097426..4097804 | 337..714 | 99 | <- | Minus |
| 3L | 4098026..4098199 | 163..336 | 100 | <- | Minus |
| 3L | 4100780..4100845 | 97..162 | 100 | <- | Minus |
| 3L | 4101477..4101556 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:51 Download gff for
BO30458.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4097426..4097804 | 337..714 | 99 | <- | Minus |
| arm_3L | 4098026..4098199 | 163..336 | 100 | <- | Minus |
| arm_3L | 4100780..4100845 | 97..162 | 100 | <- | Minus |
| arm_3L | 4101477..4101556 | 17..96 | 100 | | Minus |
BO30458.pep Sequence
Translation from 16 to 730
> BO30458.pep
MSRLTEEMVIARAKQSDLSLIKKLNCWGSDLSDVSIIKRMRGVEVLALSV
NKISTLSTFEDCTKLQELYLRKNSISDINEIAYLQNLPSLRNLWLEENPC
CERAGPNYRSIVLRALPNLKKLDNVEVTQQEVEDALRGGGVAAPEDEVYE
DAYQQQQQSRRSSPQQILQQQQHSYPQHSPPPQQQYQQQQQQQQQQQRGC
TTPTKEVSGCHCLCGFSHTTPRFSCYNLLPWQASFLDH
BO30458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-PF | 232 | CG14995-PF | 1..232 | 1..232 | 1222 | 100 | Plus |
| CG14995-PD | 354 | CG14995-PD | 1..206 | 1..206 | 1060 | 100 | Plus |
| CG14995-PG | 362 | CG14995-PG | 1..206 | 1..206 | 1060 | 100 | Plus |
| CG14995-PC | 411 | CG14995-PC | 1..206 | 1..206 | 1060 | 100 | Plus |
| CG14995-PI | 419 | CG14995-PI | 1..206 | 1..206 | 1060 | 100 | Plus |
