Clone BO30483 Report

Search the DGRC for BO30483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:304
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG42495-RA
Protein status:BO30483.pep: Imported from assembly
Sequenced Size:460

Clone Sequence Records

BO30483.complete Sequence

460 bp assembled on 2011-09-22

GenBank Submission: KX794638

> BO30483.complete
GAAGTTATCAGTCGACATGGAATCACTCGCAAAATATCGATACAGTTTGG
TGGCTGGCTCCTTCGCAGCTGCAGGAAGCTTTTTCGGAAAACTTCCCAGC
CACCTGAGCGCCCAAAAACTACTGAATACTTCGCAAATAAATGAAGACTT
TTCTTATTTAGAAATAGCATTACTTCAGCTGCTGCCACTAGTGTTAATGG
TAACATGCAACGTTTGCAACTTGCGTTTCTTTTTGAAGGCCCTGCAAATG
ACTGAACAAACTTTAACGTGCGTCGTTTTAACTGCCGCTTCGAATTATGT
CTTATCGTTTGTCCTAGGTGCGCTTGTTTATCGGGAGCCACTGACAGTAC
TATCTGGCATCGGAATAACTCTCATTCTGGCTGGTCTTTGGTTTCTTTGC
GACGGAGGAACAGTCGAGTCCGAAAAGCAGGACAAAATGGAAGCAAGCTT
TCTAGACCAT

BO30483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42495-RA 429 CG42495-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42495-RA 654 CG42495-RA 75..500 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18667644..18667793 158..307 750 100 Plus
3L 28110227 3L 18667435..18667579 17..161 725 100 Plus
3L 28110227 3L 18667842..18667981 303..442 685 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 07:42:32 has no hits.

BO30483.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:35:24 Download gff for BO30483.complete
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:15 Download gff for BO30483.complete
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:11 Download gff for BO30483.complete
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:11 Download gff for BO30483.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18667435..18667579 17..161 100 -> Plus
3L 18667648..18667793 162..307 100 -> Plus
3L 18667847..18667981 308..444 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:15 Download gff for BO30483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18660535..18660679 17..161 100 -> Plus
arm_3L 18660748..18660893 162..307 100 -> Plus
arm_3L 18660947..18661081 308..444 98   Plus

BO30483.pep Sequence

Translation from 16 to 460

> BO30483.pep
MESLAKYRYSLVAGSFAAAGSFFGKLPSHLSAQKLLNTSQINEDFSYLEI
ALLQLLPLVLMVTCNVCNLRFFLKALQMTEQTLTCVVLTAASNYVLSFVL
GALVYREPLTVLSGIGITLILAGLWFLCDGGTVESEKQDKMEASFLDH

BO30483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42495-PA 142 CG42495-PA 1..142 1..142 709 100 Plus