Clone BO30492 Report

Search the DGRC for BO30492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:304
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCG5897-RB
Protein status:BO30492.pep: Imported from assembly
Sequenced Size:1063

Clone Sequence Records

BO30492.complete Sequence

1063 bp assembled on 2011-09-27

GenBank Submission: KX797333

> BO30492.complete
GAAGTTATCAGTCGACATGAGAGTTCCGCCATGTGGATTCCATTTGTGTG
TCATTTTGGCCATAGTCGCGGAGATTAGAGGATTTTCGATGGAGGACAAG
TGCAAATTGTGGGCTGGAACTGGCTATATTGGTGATCCCAGTGATTGCCA
GGCCTGGGGATATTGCCAGGACAACAAACTCATCGATAGACGTAGCTGCA
CTGAAGGATTACTATACAGTTTCCGAGATGGCACCTGCAAGAGGGCATCC
GATACGATTTGTCATTCCCAGCTCTCGGAGATTTGCGCCAGCCTCGAGCC
TTGGAATTACGTGGCCAACCCAGCTGATTGTCGGAGATTCGTCAAGTGCG
CGGATTTGGATGATCCCACTTGGGGCGACTGTGGTGTGGGTCAGGTGTTT
AGCAACAAGAAGCAGACCTGCCTCGAGGAGGTTGCCGGCTGTCCACAGGA
TAATATCTGCTCCCATATGAAAGATGGCTCCTTTGTGGGCGATCCCAAGA
GCTGTCAAATCTACTATAAATGCCATAATGGATTTGGCACCATGTTGAAT
TGCTCCGTTGGGCGATACTTTAATCGCAAAACGGGTAATTGCCAATCCTG
GATGCCGCATTACTGTTCCAAGGATGATGAGGATAACATATTAACGCCAC
CATCCACGGACCATAATATCTGCTCCAAGTATTATCAACGGGATAGAGAT
GGAGTGCAACTCCTGCCGGATCTGATGACCTGTTACGGATATTACTCCTG
CACATCCCAGTTCGACGTGGGCAAGTGGAGCAGCTGTCCTTGGGGACTGC
ACTTTGAGTGGTGGAGCCAGCGGTGTGGCTCGCCGAAAGACAATAGCTGC
TCCTACGATCGCTGCGCCAATAGGAACCAACTAATGGTGGCCACCATTAA
CACGGGCTGCAGGGAGTTCACGATCTGTCAAGATAATCGTTCGAAGAGCT
CGCAAAAGTGTCCGGAGGACTATCCATATTTCAATGAGCTATTGCGACAG
TGCACCGATGAATATCCCAATCATAGGGTGTGCTACATGGATGGAGCAAG
CTTTCTAGACCAT

BO30492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5897-RB 960 CG5897-PB 1..957 89..1045 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5897-RB 1671 CG5897-RB 14..1042 17..1045 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11887888..11888911 1045..22 5120 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:07:15 has no hits.

BO30492.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 16:24:09 Download gff for BO30492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5897-RB 14..1042 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:56 Download gff for BO30492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5897-RB 14..1042 17..1047 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:34 Download gff for BO30492.complete
Subject Subject Range Query Range Percent Splice Strand
CG5897-RB 14..1042 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:34 Download gff for BO30492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11887886..11888916 17..1047 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:56 Download gff for BO30492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11880986..11882016 17..1047 99   Minus

BO30492.pep Sequence

Translation from 16 to 1063

> BO30492.pep
MRVPPCGFHLCVILAIVAEIRGFSMEDKCKLWAGTGYIGDPSDCQAWGYC
QDNKLIDRRSCTEGLLYSFRDGTCKRASDTICHSQLSEICASLEPWNYVA
NPADCRRFVKCADLDDPTWGDCGVGQVFSNKKQTCLEEVAGCPQDNICSH
MKDGSFVGDPKSCQIYYKCHNGFGTMLNCSVGRYFNRKTGNCQSWMPHYC
SKDDEDNILTPPSTDHNICSKYYQRDRDGVQLLPDLMTCYGYYSCTSQFD
VGKWSSCPWGLHFEWWSQRCGSPKDNSCSYDRCANRNQLMVATINTGCRE
FTICQDNRSKSSQKCPEDYPYFNELLRQCTDEYPNHRVCYMDGASFLDH

BO30492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5897-PB 319 CG5897-PB 1..319 25..343 1861 100 Plus
CG6933-PE 351 CG6933-PE 8..345 10..339 610 34.8 Plus
CG6933-PB 351 CG6933-PB 8..345 10..339 610 34.8 Plus
CG6933-PA 351 CG6933-PA 8..345 10..339 610 34.8 Plus
CG6933-PD 363 CG6933-PD 20..357 10..339 610 34.8 Plus