BO30502.complete Sequence
2590 bp assembled on 2013-09-16
GenBank Submission: KX797266
> BO30502.complete
GAAGTTATCAGTCGACATGCTGCTGGCGGAAATCGGGCAACAGGAAAACA
TGCTACCGCCCCCCTACGTAGCAGCAATCAAGCGAAAGATCGATCCAGAG
CAACAGCAGCAACGCAAGCAGCACAGAAGCAACATCCTCGGATGCAACAA
GAGCAGCAGCATCAACTGCAGCAGCATCAACGGCGACAATCGACACCTTC
AGAGGCAGCAGGGCAAAATGTATTACAACTCCAGTTCACGACCCTTTTGG
AGGAAATGCAGATCGGCTGCCCCAACGAATCTCATGACCACAATACCCAC
TAACAACGACTTGTGCAACACAGCAGCAGCGGCAACATATGACAAAATGC
AGAGTTGCAACAAAAACAGCAGTAGCCGTATCACCACCACCAACAACAAC
GTTACTACAACTAGCAACATTAGCGGCAACAGCAGCAACAAGCGCTGCCC
TCAGAAGTACACCGGCAACACCCTAGCCGTCAACAGTAACATGCTGGCCT
ATCAGCAGCAAGCCACCGCCGGTGGCAAGAACTCCACTCGGAAGAGTCGT
CACAACAACAACAAGCAAAATCATCAGCAGCAACAACAACAACAGCAGCA
GCAGTTTGATCATATCCACAAGCGCAATGGAACCGCTGGAGGCACCGGAT
CCGAGTGCTCTCCCGCTGCACCCACATCCAACTGGCTCCAACGGGGCTAC
GGACGACAGTTTGTCCATTCTTCATGCATCGAAGACAAACTCCTAGGTCA
TCACAATCCGGGCCATCGCAATAGCACCAGCAGCGACGCGACCAGCGAGG
ATATAGACTCCAGTAGCGAGCTTCCAAACAAGTCGAAGGGAAATTCATGC
GCCGGCAGCATCCATGCTTCAGGCGGCAGCAAGAGTCGCTCGAAGCGCCA
CCAAAAGCAGTCCGGCCAGCAGACTCGCAATCCCGATCACAATGGCCAAA
GGACCGGAGCAGCTACCCCCTGTACGGGCCAGAAAGCCAAGCAGGGGAAT
GCCAAGTGGCGCCAGCAGCAACCCAATCCCAGCAGCAACAACCAACAGCA
GCAGATGCAACAACAGATGCAACAGCAGAAGCGCGGCAGGAACAAGAAGC
CCGGGAAGTGGAGCAACAACATCATTGACAACCCAAACAGCAATCACGGC
GGCAGCAGTCAACAGAAGACTTGCGACAGCAGCTCCTCCTCTGCGCTGAG
TTCGCCAACCAGTTCGGCCACCACATCGGCCACCAGTTCGCCCACCAATT
CGCCCACCAGTTACCCCCGTGCCAATGGAAATCGGAAGCGGATCGAAGCG
GCACTGGAATGGCGCCGGGAGCAAGAGCTTGGTCGCCAGAATGCCAACTT
CCTGGTTCCTCCTCTCCGCCAGTACGAGCAACTGGAGTTTGACGATAAAA
CCGTGGTGCAGCAACTGCGTCGACACATCATAGATAATCATCTGCTGAGG
GTCTACGGCTTTCCCGTGGATTCGGTGGTCCACGAAGGCGCCATCGAAAT
CTTCAAGTGCATGCCGCACATGAGTTTTGCAGCCGCGCTTGCGGAAACTG
CTCAGGCCGTTACAGTGATCAACTACCACGACGGACTGACCAACCGCGCC
GAGGAGGAGGTGGCCAATTCGACCGATTCGGGCAACAGTTCACCCCAATC
CTTAGACTCCGAATCAGGCGGCGAGTGGAGCGGCAGTGAATGCGAGTCCT
CGAACTCATCGTCCTCCTCCGCCGGCGAAGCAGCGCTGGGTCTCGAGTTG
AAGTACTGCCATTTTGTGCCGGTGGAAAGGAGTCTGTCCAAGCCTTGTGC
GCGCTGCAAGCGCCACTTTCTGGTTGACGAGCTGACGGGTCAGTATTTGA
CCCATGAGGAATGCCAATACCACTCAGGCAAGTACCAGCGGTACTACGAT
GGCGTCAGCCACGGACGCTGGACGTGCTGCAACGAGGGCGAGGAATCCTC
GCCGGGATGCTGCCTGGGCGACCGTCATGTGTGGTCGGGATCGGTGGTGG
GGGTCAACGGGCCCTACTACGATTTCGTTAGGACCGAGCACCGAGGATCC
GGCGAGGACGAGCCCGCCGTATACGCCCTGGACTGCGAGATGAGCTACAC
GGGTCGTGGTCTGGACGTGACCAAGGTCTCCCTGGTGGCACTCAACGGGC
AATTGGTTTATGAGCATTTCGTTCGGCCCGTGTGCGACATAATAGACTAC
AACACCCAGTATTCGGGCATTACGGAAACGGATCTGTGTTCCGGAGCCAA
GAGTCTGGCCGAGGTGCAAAGGGATCTCCTCCAGCTGATCACGGCGGACA
CCATCCTTATCGGACATGGATTGGAAAACGATCTGCGAGCGCTACGCTTG
GTTCACAACACCCTGATCGACACCTCCATTAGCTTCCCGCACTGCAATGG
GTTCCCCTACCGCCGGGCACTGCGTCACCTCACAAAGGTTCACCTGAAGC
GTGACATTCAAGCTGGCGACGGCACCACGGGACACAGCAGCTTCGAGGAC
TCGCGCGCCTGTATGGAACTGATGCTGTGGCGGGTCAACCGTGAGCTGGA
TCCCGCTTGGAGCTGGGACGATGCAAGCTTTCTAGACCAT
BO30502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42666-RJ | 2559 | CG42666-PJ | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| CG42666-RE | 2559 | CG42666-PE | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| CG42666-RF | 2286 | CG42666-PF | 49..2283 | 338..2572 | 11175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42666-RJ | 3749 | CG42666-RJ | 716..3273 | 15..2572 | 12790 | 100 | Plus |
| CG42666-RE | 3629 | CG42666-RE | 596..3153 | 15..2572 | 12790 | 100 | Plus |
| CG42666-RF | 3806 | CG42666-RF | 362..2596 | 338..2572 | 11175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1850618..1852457 | 733..2572 | 9200 | 100 | Plus |
| X | 23542271 | X | 1843692..1844087 | 339..734 | 1980 | 100 | Plus |
| X | 23542271 | X | 1825658..1825985 | 15..342 | 1625 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 14:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2832 | 68..602 | 362 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2659 | 298..603 | 348 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..7086 | 315..612 | 300 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6923 | 386..590 | 292 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..7032 | 320..626 | 272 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2527 | 378..603 | 264 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2971 | 93..600 | 252 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2563 | 323..578 | 248 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6511..6951 | 125..588 | 231 | 56 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1165 | 345..468 | 190 | 62.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1154 | 373..469 | 169 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1163 | 321..433 | 153 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1165 | 315..413 | 151 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1575 | 387..445 | 132 | 73.3 | Plus |
| BS | 5142 | BS BS 5142bp | 2017..2105 | 357..442 | 132 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1508..1591 | 358..443 | 128 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1613 | 1087..1178 | 119 | 61.5 | Plus |
BO30502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:13 Download gff for
BO30502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42666-RE | 598..3153 | 17..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:30 Download gff for
BO30502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42666-RE | 598..3153 | 17..2574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:30 Download gff for
BO30502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1825660..1825981 | 17..338 | 100 | -> | Plus |
| X | 1843692..1844087 | 339..734 | 100 | -> | Plus |
| X | 1850620..1852457 | 735..2574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:13 Download gff for
BO30502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1719693..1720014 | 17..338 | 100 | -> | Plus |
| arm_X | 1737725..1738120 | 339..734 | 100 | -> | Plus |
| arm_X | 1744653..1746490 | 735..2574 | 99 | | Plus |
BO30502.pep Sequence
Translation from 16 to 2590
> BO30502.pep
MLLAEIGQQENMLPPPYVAAIKRKIDPEQQQQRKQHRSNILGCNKSSSIN
CSSINGDNRHLQRQQGKMYYNSSSRPFWRKCRSAAPTNLMTTIPTNNDLC
NTAAAATYDKMQSCNKNSSSRITTTNNNVTTTSNISGNSSNKRCPQKYTG
NTLAVNSNMLAYQQQATAGGKNSTRKSRHNNNKQNHQQQQQQQQQQFDHI
HKRNGTAGGTGSECSPAAPTSNWLQRGYGRQFVHSSCIEDKLLGHHNPGH
RNSTSSDATSEDIDSSSELPNKSKGNSCAGSIHASGGSKSRSKRHQKQSG
QQTRNPDHNGQRTGAATPCTGQKAKQGNAKWRQQQPNPSSNNQQQQMQQQ
MQQQKRGRNKKPGKWSNNIIDNPNSNHGGSSQQKTCDSSSSSALSSPTSS
ATTSATSSPTNSPTSYPRANGNRKRIEAALEWRREQELGRQNANFLVPPL
RQYEQLEFDDKTVVQQLRRHIIDNHLLRVYGFPVDSVVHEGAIEIFKCMP
HMSFAAALAETAQAVTVINYHDGLTNRAEEEVANSTDSGNSSPQSLDSES
GGEWSGSECESSNSSSSSAGEAALGLELKYCHFVPVERSLSKPCARCKRH
FLVDELTGQYLTHEECQYHSGKYQRYYDGVSHGRWTCCNEGEESSPGCCL
GDRHVWSGSVVGVNGPYYDFVRTEHRGSGEDEPAVYALDCEMSYTGRGLD
VTKVSLVALNGQLVYEHFVRPVCDIIDYNTQYSGITETDLCSGAKSLAEV
QRDLLQLITADTILIGHGLENDLRALRLVHNTLIDTSISFPHCNGFPYRR
ALRHLTKVHLKRDIQAGDGTTGHSSFEDSRACMELMLWRVNRELDPAWSW
DDASFLDH
BO30502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42666-PJ | 852 | CG42666-PJ | 1..852 | 1..852 | 4560 | 100 | Plus |
| CG42666-PE | 852 | CG42666-PE | 1..852 | 1..852 | 4560 | 100 | Plus |
| CG42666-PF | 761 | CG42666-PF | 17..761 | 108..852 | 3992 | 100 | Plus |
| CG42666-PA | 761 | CG42666-PA | 17..761 | 108..852 | 3992 | 100 | Plus |
| CG42666-PC | 761 | CG42666-PC | 17..761 | 108..852 | 3992 | 100 | Plus |
