BO30510.complete Sequence
2506 bp assembled on 2013-09-16
GenBank Submission: KX795722
> BO30510.complete
GAAGTTATCAGTCGACATGGTGTTGGCGGAGCGCAACACCACGGATGTGG
TGCGCAACGGGCGCCGTTCGCGCGGCCCCAGTCCCAATACGCACACCACG
GGCGGCGTCACCAACAGCGCCAGCCTCGTGGGCAGCGGCAACAACAGCGG
CCACTCCGGGAACGCCAATGCGAACGAGAAGACCACCACAGCTGTGCCAG
GTGCAGGCACGCCGGAGAGCTCCGACGACGACAACTCCACCAAACGGAAC
GGCAAGAGCAAGGCCAAGCAGTCTGAGTACGAAGAGAAAATCCGCGTTGG
ACGCGACTACCAGGCGGTTTGTCCGCCGCTCGTTCCGGAAGCGGAGCGCC
GCCCGGAACAAATGAACGAACGCGCCCTCCTCGTATGGTCGCCCACCAAG
GAGATTCCTGATCTGAAATTGGAGGAGTACATTTCGGTGGCCAAGGAAAA
GTACGGCTACAACGGCGAACAGGCATTGGGCATGCTGTTCTGGCACAAAC
ACGATCTGGAGCGTGCCGTAATGGACCTGGCCAACTTCACGCCCTTCCCG
GACGAGTGGACCATCGAGGACAAGGTGCTGTTCGAACAGGCCTTCCAGTT
CCACGGGAAGAGCTTCCACCGCATCCGCCAGATGCTGCCAGACAAATCCA
TAGCCAGTTTGGTCAAGTACTACTACTCGTGGAAGAAGACGCGTCACCGC
AGCAGCGCCATGGATCGCCAAGAAAAGGCCATCAAGGCGGTGGTCAAGGA
TGGCTCCGAGAACGGCAGCGAGGTGGGCAGCAACGAGGAGTCTGATAACG
ATGACAAGAAAGGGCATGGCACAAATAGCACCATAAATACCATCGACGCC
ACCACGACCTCAACCAACAACAGCACCACCAACTCCAACACCACCACCCC
TGCAAATATCATTGCCAACACGATCAACAGCAACCATAGCAGCAGCAACA
GCGGCGGCGGTGGCAACATCAACAACAACGGGGAGGAGAACATCCAGGCC
GTCGGCGGGAGCAACACCATCAGCAACACGAGCAACAACGACATGGACGC
CGAGCAGTTGTCCCTCTTCGCCGGAAACGCCCAGATCGAGGAGATGATGG
CACTCGGCCTAGCCGCTGATAGAGCCATCGGTGCCAATGGCGGCAACAAC
AACAACAACGGCGAAATGGGGGGCGATCCTGGCCTGATGCGACGCATGGT
GGTGGGCGGATTTTGCAAGATTTGCAACGTGGTCTGCCATGTGCTGCACG
ACTCGCCGCTGGGGCGCATGTGCAAGAGCTGTCACACCCACTGGAGGCGC
ACGGGCAATCGGCGACCCATTTCCGGGCCGGAGGGCAATGCTCCCCGAAG
GTCCACACACAATTGCGCCGCCACTGCCGATCGATCCAAGCGCAAACCGC
CCAAGGGCATGTACATCAACCACGATGACCTCACGGCCCTCGCAAGCTGC
GGGAATCCCAGTCTCTATTTGGCGGAACGCGAGCGGAAGCTAACAGCGCT
CATGGCCGAAATACAGAAGAATAGGCAAGTAATGGAGCAGCTAGACAAGG
AGTGCGAAACCATCAATGTGGATGATGTGCTTTCCAAGCCGGCGGCAGCC
AACACCGAATCTGCCCAGCCACGCATCTCTGCCCGTTGGCTGCCGGATGA
GATCCAAGTGGCATTGCTCGCGATCCGCGAGTATGGAAAAAACTTTCCTA
CGATTGCCAAGGTGGTGGCCACCAAAACGGAGGCGCACGTGCGCACCTTT
TACTTAAACAATCGGCGCCGCTACAATCTCGACCAGATCGTAAAGGAGTA
CGAGGCTGGCAAGTCCGAGGAGTCGGGCGCAGAGGAGCAGACCGAGCCTG
CTGTCGACGCAGCCGCGGCTGGCGCCGCAACAGCATCTGCGCCCAGCGCG
GCTGATTCTACATCCGCCGCGAGCGCGACAGCAGACAGGAAACAGTCCAC
CGAAAACAGCAACAACGGAGTTGAGACCATGCAGGAATCGTTGCCCAAGA
AGGAGGACCCTAAGAAGCCGGAGCTGGCAGCGGCTGTGCTCAAGATTGGC
GTGGCCGAGGCAGCAGATGCCGTGGCCACTGTGGCATCCAGCACAGCCTC
TGGCGTCATCGGTGCCGCCACCTCCGCCAGCAAGCCCAGCACCAGTGCTA
CAATCACCATTATAGATGAGTCTGACACGGCCACGAACTCGAGCAGCGAC
GTTGTCACCACTGGACTTGCCACATCCACCGGCTCGTCCGCACTGTCCAG
CACAACTAGTGCGCCCGCATCCAAAACGCAGACCAGCAGCGAGGAGTTGT
CCGCTCAGAAATCCAATCCCGCGAGCGGGATCGCAGCCATAGGTGCTGCA
ACGGGCGGTGGCCAGACTGCCAACAGCTCTGGCAGCAAGCGGGATAGCTC
TGTATTGCCCGTCGCCGAGCAGCCGCCGGCGAAGAAAATCGCGCTCAGCA
CCGGAGGCGGAAGCAGCGTCGCAGAGTTCCTGGCCAACGCAAGCTTTCTA
GACCAT
BO30510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoRest-RI | 2475 | CG42687-PI | 1..2472 | 17..2488 | 12360 | 100 | Plus |
| CoRest-RH | 2475 | CG42687-PH | 1..2472 | 17..2488 | 12360 | 100 | Plus |
| CoRest-RG | 2475 | CG42687-PG | 1..2472 | 17..2488 | 12360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoRest-RI | 3255 | CG42687-RI | 565..3036 | 17..2488 | 12360 | 100 | Plus |
| CoRest-RH | 3155 | CG42687-RH | 465..2936 | 17..2488 | 12360 | 100 | Plus |
| CoRest-RG | 3998 | CG42687-RG | 385..2856 | 17..2488 | 12360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19528894..19529601 | 1700..2407 | 3540 | 100 | Plus |
| X | 23542271 | X | 19526839..19527329 | 807..1297 | 2455 | 100 | Plus |
| X | 23542271 | X | 19523096..19523315 | 17..236 | 1100 | 100 | Plus |
| X | 23542271 | X | 19527619..19527834 | 1295..1510 | 1080 | 100 | Plus |
| X | 23542271 | X | 19523715..19523929 | 420..634 | 1075 | 100 | Plus |
| X | 23542271 | X | 19528635..19528823 | 1511..1699 | 945 | 100 | Plus |
| X | 23542271 | X | 19523989..19524163 | 634..808 | 875 | 100 | Plus |
| X | 23542271 | X | 19523493..19523629 | 283..419 | 685 | 100 | Plus |
| X | 23542271 | X | 19529673..19529754 | 2407..2488 | 410 | 100 | Plus |
| X | 23542271 | X | 19523387..19523434 | 237..284 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 14:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2637 | 828..1162 | 333 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7007 | 857..1159 | 307 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6965 | 820..1070 | 278 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6957 | 819..1051 | 271 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7011 | 753..1043 | 268 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6843 | 923..1043 | 235 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2550 | 820..1026 | 234 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2481 | 889..1048 | 230 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6858 | 916..1043 | 227 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2608 | 753..1043 | 219 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2727..2900 | 883..1057 | 214 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2526 | 939..1159 | 194 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2716..2969 | 822..1057 | 194 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1176 | 858..978 | 187 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2428 | 923..1043 | 181 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2713..2911 | 846..1043 | 162 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6945 | 87..315 | 160 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6890 | 79..192 | 151 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1159 | 935..1044 | 145 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1176 | 917..1019 | 144 | 63.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 904..1034 | 856..980 | 144 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6916 | 93..261 | 141 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1580 | 915..981 | 130 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2666 | 916..975 | 128 | 69.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3200..3319 | 904..1028 | 128 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1481..1596 | 861..978 | 125 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..7018 | 93..266 | 124 | 57 | Plus |
BO30510.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:24 Download gff for
BO30510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoRest-RG | 385..2856 | 17..2490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:41 Download gff for
BO30510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoRest-RG | 385..2856 | 17..2490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:41 Download gff for
BO30510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19527621..19527834 | 1297..1510 | 100 | -> | Plus |
| X | 19528635..19528823 | 1511..1699 | 100 | -> | Plus |
| X | 19523096..19523315 | 17..236 | 100 | -> | Plus |
| X | 19523387..19523434 | 237..284 | 100 | -> | Plus |
| X | 19523495..19523629 | 285..419 | 100 | -> | Plus |
| X | 19523715..19523929 | 420..634 | 100 | -> | Plus |
| X | 19523990..19524163 | 635..808 | 100 | -> | Plus |
| X | 19526841..19527328 | 809..1296 | 100 | -> | Plus |
| X | 19528894..19529601 | 1700..2407 | 100 | -> | Plus |
| X | 19529674..19529754 | 2408..2490 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:24 Download gff for
BO30510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19417129..19417348 | 17..236 | 100 | -> | Plus |
| arm_X | 19417420..19417467 | 237..284 | 100 | -> | Plus |
| arm_X | 19417528..19417662 | 285..419 | 100 | -> | Plus |
| arm_X | 19417748..19417962 | 420..634 | 100 | -> | Plus |
| arm_X | 19418023..19418196 | 635..808 | 100 | -> | Plus |
| arm_X | 19420874..19421361 | 809..1296 | 100 | -> | Plus |
| arm_X | 19421654..19421867 | 1297..1510 | 100 | -> | Plus |
| arm_X | 19422668..19422856 | 1511..1699 | 100 | -> | Plus |
| arm_X | 19422927..19423634 | 1700..2407 | 100 | -> | Plus |
| arm_X | 19423707..19423787 | 2408..2490 | 97 | | Plus |
BO30510.pep Sequence
Translation from 16 to 2506
> BO30510.pep
MVLAERNTTDVVRNGRRSRGPSPNTHTTGGVTNSASLVGSGNNSGHSGNA
NANEKTTTAVPGAGTPESSDDDNSTKRNGKSKAKQSEYEEKIRVGRDYQA
VCPPLVPEAERRPEQMNERALLVWSPTKEIPDLKLEEYISVAKEKYGYNG
EQALGMLFWHKHDLERAVMDLANFTPFPDEWTIEDKVLFEQAFQFHGKSF
HRIRQMLPDKSIASLVKYYYSWKKTRHRSSAMDRQEKAIKAVVKDGSENG
SEVGSNEESDNDDKKGHGTNSTINTIDATTTSTNNSTTNSNTTTPANIIA
NTINSNHSSSNSGGGGNINNNGEENIQAVGGSNTISNTSNNDMDAEQLSL
FAGNAQIEEMMALGLAADRAIGANGGNNNNNGEMGGDPGLMRRMVVGGFC
KICNVVCHVLHDSPLGRMCKSCHTHWRRTGNRRPISGPEGNAPRRSTHNC
AATADRSKRKPPKGMYINHDDLTALASCGNPSLYLAERERKLTALMAEIQ
KNRQVMEQLDKECETINVDDVLSKPAAANTESAQPRISARWLPDEIQVAL
LAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYNLDQIVKEYEAGKS
EESGAEEQTEPAVDAAAAGAATASAPSAADSTSAASATADRKQSTENSNN
GVETMQESLPKKEDPKKPELAAAVLKIGVAEAADAVATVASSTASGVIGA
ATSASKPSTSATITIIDESDTATNSSSDVVTTGLATSTGSSALSSTTSAP
ASKTQTSSEELSAQKSNPASGIAAIGAATGGGQTANSSGSKRDSSVLPVA
EQPPAKKIALSTGGGSSVAEFLANASFLDH
BO30510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoRest-PI | 824 | CG42687-PI | 1..824 | 1..824 | 4214 | 100 | Plus |
| CoRest-PH | 824 | CG42687-PH | 1..824 | 1..824 | 4214 | 100 | Plus |
| CoRest-PG | 824 | CG42687-PG | 1..824 | 1..824 | 4214 | 100 | Plus |
| CoRest-PJ | 336 | CG42687-PJ | 3..336 | 491..824 | 1582 | 97.9 | Plus |
| CoRest-PF | 590 | CG42687-PF | 264..590 | 498..824 | 1579 | 99.7 | Plus |
