BO30511.complete Sequence
679 bp assembled on 2011-09-30
GenBank Submission: KX798111
> BO30511.complete
GAAGTTATCAGTCGACATGTGTGCGGCCCTCTTACGAAGTGTTAAATTGG
TTTATTTACGGCCAATACTAGCTAAACCGAATTTCCAGCTCTTACACACC
AGCAGCGTGCTCCGCAAATGGCGGAATGCATCCTCCGGCGAAGTGGAACG
GAAGCTCCTCTTTGGCGACAGGCTACCAGATAACTATAAACTGATTTACC
GGGCCCCTATCGAGAGCTACGTGACCTGGACGAAGAATATATCCACTGCC
ACGACCACTGTACTTGCTGCGGTGGCCGCCTATCACTATGCCACAACCAT
AAACTACCTGGATATGGTCCAGAAAATGGACATAGCCATTCTGGTGTCCC
AGGAATCAGATCTGTACTACTTTGTGGGTGGATTTCTGCTTATAAACCTG
GCGATTCGAGCTTTTGTCGCCAAATATCCACTGAGAATATACAAGAGCTC
GGAAAAATACGTGGCTGTCTATGGGTCCCAACTACCCATTGGAACTGTAA
AACACTATTTTGAACGCGGTCAAATAGCTGAATACAAGAATTTTTTAAAT
CCCTGGAGCCACATTATGTACAAACTGGGCAACCGCTCCTCAATGCTTCT
GGTTGATTACTTCAAGACCCCCTCGGAGTTCCACCAACTGTTCGCGACCA
AACAAGAAACGGCAAGCTTTCTAGACCAT
BO30511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-RC | 648 | CG33228-PC | 1..645 | 17..661 | 3225 | 100 | Plus |
| CG33228-RB | 648 | CG33228-PB | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-RC | 737 | CG33228-RC | 46..690 | 17..661 | 3225 | 100 | Plus |
| CG33228-RB | 809 | CG33228-RB | 100..744 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24668737..24669096 | 456..97 | 1800 | 100 | Minus |
| 2R | 25286936 | 2R | 24668476..24668680 | 661..457 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 24669152..24669231 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:50:35 has no hits.
BO30511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:19 Download gff for
BO30511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..744 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:06 Download gff for
BO30511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..744 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:55 Download gff for
BO30511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 100..744 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:55 Download gff for
BO30511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24668737..24669096 | 97..456 | 100 | <- | Minus |
| 2R | 24669152..24669231 | 17..96 | 100 | | Minus |
| 2R | 24668474..24668680 | 457..663 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:06 Download gff for
BO30511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20555997..20556203 | 457..663 | 99 | <- | Minus |
| arm_2R | 20556260..20556619 | 97..456 | 100 | <- | Minus |
| arm_2R | 20556675..20556754 | 17..96 | 100 | | Minus |
BO30511.pep Sequence
Translation from 16 to 679
> BO30511.pep
MCAALLRSVKLVYLRPILAKPNFQLLHTSSVLRKWRNASSGEVERKLLFG
DRLPDNYKLIYRAPIESYVTWTKNISTATTTVLAAVAAYHYATTINYLDM
VQKMDIAILVSQESDLYYFVGGFLLINLAIRAFVAKYPLRIYKSSEKYVA
VYGSQLPIGTVKHYFERGQIAEYKNFLNPWSHIMYKLGNRSSMLLVDYFK
TPSEFHQLFATKQETASFLDH
BO30511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-PC | 215 | CG33228-PC | 1..215 | 1..215 | 1107 | 100 | Plus |
| CG33228-PB | 215 | CG33228-PB | 1..215 | 1..215 | 1107 | 100 | Plus |
