Clone BO30516 Report

Search the DGRC for BO30516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptwac-RC
Protein status:BO30516.pep: Imported from assembly
Sequenced Size:484

Clone Sequence Records

BO30516.complete Sequence

484 bp assembled on 2011-09-30

GenBank Submission: KX794072

> BO30516.complete
GAAGTTATCAGTCGACATGCGTCTAGGCCAGCACTTCGATGACCAGTTAA
AGCTGGCTAGCGTCGAGTTGGGCGATTTCTCGGACGATGACCTGGCGCTC
CTTGACAAATGCGCCCAATATTATTCACTTTTGCACATTCACGACATCAA
TCTGAACTACTTGCGCGACTTCTATTGTGCCAAGAAGAGGGAATGCATAG
AAAACCGGCAGACCACAGTGCAGCAACGCGTAGAGCTGCAGCGCATCCTC
TCGTCCATCGAGGAGGCTACTAGGGACGTAGTTATGTTGGAGAGATTTAA
TGCTGCTGCGGAAGAGCGGCTCATCCCGGATATCGTCGTAATGCAGCGAA
ACGCCCAACAGCTTGCAACAAAACAGGCCTTACTGGACCGGCAAAAAACC
CTTAAGATCCCAAAGGATTTTAGCATTGAAAGTGTCATCGAGAAGGTAGA
TTCGCTGGAGCAGCGCGCAAGCTTTCTAGACCAT

BO30516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
wac-RD 492 CG13879-PD 40..489 17..466 2235 99.8 Plus
wac-RC 453 CG13879-PC 1..450 17..466 2235 99.8 Plus
wac-RB 492 CG13879-PB 40..489 17..466 2235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
wac-RD 808 CG13879-RD 256..705 17..466 2235 99.8 Plus
wac-RC 633 CG13879-RC 81..530 17..466 2235 99.8 Plus
wac-RB 634 CG13879-RB 82..531 17..466 2235 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 258486..258763 17..294 1375 99.6 Plus
3L 28110227 3L 258821..258994 293..466 870 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:57:16 has no hits.

BO30516.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:25 Download gff for BO30516.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..531 17..468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:09 Download gff for BO30516.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..531 17..468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:58 Download gff for BO30516.complete
Subject Subject Range Query Range Percent Splice Strand
wac-RB 82..531 17..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:58 Download gff for BO30516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 258486..258763 17..294 99 -> Plus
3L 258823..258994 295..468 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:09 Download gff for BO30516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 258823..258994 295..468 98   Plus
arm_3L 258486..258763 17..294 99 -> Plus

BO30516.pep Sequence

Translation from 16 to 484

> BO30516.pep
MRLGQHFDDQLKLASVELGDFSDDDLALLDKCAQYYSLLHIHDINLNYLR
DFYCAKKRECIENRQTTVQQRVELQRILSSIEEATRDVVMLERFNAAAEE
RLIPDIVVMQRNAQQLATKQALLDRQKTLKIPKDFSIESVIEKVDSLEQR
ASFLDH

BO30516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
wac-PC 150 CG13879-PC 1..150 1..150 751 100 Plus
wac-PD 163 CG13879-PD 14..163 1..150 751 100 Plus
wac-PB 163 CG13879-PB 14..163 1..150 751 100 Plus