Clone BO30517 Report

Search the DGRC for BO30517

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG42749-RC
Protein status:BO30517.pep: Imported from assembly
Sequenced Size:1069

Clone Sequence Records

BO30517.complete Sequence

1069 bp assembled on 2011-09-30

GenBank Submission: KX794967

> BO30517.complete
GAAGTTATCAGTCGACATGGCGATGCGACACTTGACAGCTGCCACAATGG
GCGTATTGCTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTG
ATGGCATCGGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAA
TGCCATGTGGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATG
AGCTCTTCTGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGT
TGCGGTATCTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGA
GGCTGGTGGTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCG
GTCAGACGATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGT
TTCGAGATGTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACA
GCAGTGCTTCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATC
GGTATCTGATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAG
GTACGTTTGCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGAC
CTACTATACGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCG
TTGGCTGCGGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATC
GTTTCGAATACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATC
GCCATACCTGCTCTATTATCGAGATTATCGTGCTCCGGCGGACAACAACA
TCTTTCCACTTATTGTGCGTGACCAAAAGTGCATTGGCGCCCCAGCATTC
CGTGCCTTGCCGGGCATCGACAACTGGTGCGAGATCAATTGCCTGCGCTA
TCCGCCCAATTGTCCGGAGGACGCCTGCCAATGTCCTCAGGAGTGCGTGG
CCATTGGCGAGTATGCTGGACAGGATGGTGCCGACACCTACTGCATGGAC
AAGTGTCTCAACTATGAATCGGAGTGTCCGCCGGACAGATGCCGCTGCTA
CGCAAGCTTTCTAGACCAT

BO30517.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RC 1038 CG42749-PC 1..1035 17..1051 5175 100 Plus
CG42749-RD 1038 CG42749-PD 1..1035 17..1051 5175 100 Plus
CG42749-RB 858 CG42749-PB 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-RC 1412 CG42749-RC 280..1315 16..1051 5180 100 Plus
CG42749-RD 1488 CG42749-RD 356..1391 16..1051 5180 100 Plus
CG42749-RB 1407 CG42749-RB 280..1083 16..819 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5301464..5302059 73..668 2980 100 Plus
X 23542271 X 5302118..5302271 666..819 770 100 Plus
X 23542271 X 5305878..5305995 819..936 590 100 Plus
X 23542271 X 5306077..5306191 937..1051 575 100 Plus
X 23542271 X 5301347..5301404 16..73 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:59:04 has no hits.

BO30517.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:25 Download gff for BO30517.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RC 253..1287 17..1053 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:22 Download gff for BO30517.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RD 357..1391 17..1053 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:36 Download gff for BO30517.complete
Subject Subject Range Query Range Percent Splice Strand
CG42749-RD 357..1391 17..1053 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:36 Download gff for BO30517.complete
Subject Subject Range Query Range Percent Splice Strand
X 5301348..5301404 17..73 100 -> Plus
X 5301465..5302059 74..668 100 -> Plus
X 5302121..5302271 669..819 100 -> Plus
X 5305879..5305995 820..936 100 -> Plus
X 5306077..5306191 937..1053 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:22 Download gff for BO30517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5199912..5200028 820..936 100 -> Plus
arm_X 5200110..5200224 937..1053 98   Plus
arm_X 5196154..5196304 669..819 100 -> Plus
arm_X 5195381..5195437 17..73 100 -> Plus
arm_X 5195498..5196092 74..668 100 -> Plus

BO30517.pep Sequence

Translation from 16 to 1069

> BO30517.pep
MAMRHLTAATMGVLLPVGVLGFVVLMQLMASVRGHGRLMDPPARNAMWRF
GYPNPVNYNDNELFCGGYAVQWEQNKGRCGICGDAYHVKSPRPHEAGGQY
AKGIISRYYTAGQTIDVEVELTANHYGRFEMFLCPNNNPRQEATQQCFDR
YPLLISGSREHRYLIPRDAKKKDIFRYKVRLPPYVTCTQCVLQWTYYTAN
MWGTCANGTEAVGCGKAETFRNCADVAIVSNTGGGIPPPFVNNKSPYLLY
YRDYRAPADNNIFPLIVRDQKCIGAPAFRALPGIDNWCEINCLRYPPNCP
EDACQCPQECVAIGEYAGQDGADTYCMDKCLNYESECPPDRCRCYASFLD
H

BO30517.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42749-PC 345 CG42749-PC 1..345 1..345 1947 100 Plus
CG42749-PD 345 CG42749-PD 1..345 1..345 1947 100 Plus
CG42749-PB 285 CG15786-PA 1..269 1..269 1482 99.6 Plus
CG42598-PB 340 CG42598-PB 1..226 6..230 489 41.6 Plus
CG41284-PC 340 CG41284-PC 1..226 6..230 481 41.1 Plus