Clone BO30518 Report

Search the DGRC for BO30518

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG33258-RB
Protein status:BO30518.pep: Imported from assembly
Sequenced Size:790

Clone Sequence Records

BO30518.complete Sequence

790 bp assembled on 2011-09-30

GenBank Submission: KX798230

> BO30518.complete
GAAGTTATCAGTCGACATGAAGCGAACTCTCCTGATTTTGGCCATAGTTT
TTTGTGGTCTAGCTATTGTGAAGGCATTAGAGTGCCAGGAGTGCCTAGAG
GATAACGATGTGTATTGTGTAGACCAAACTTCCTATAGGAATTGCATCAA
AAGCAAGCCTTTTGGCAACGTGATAAGCTGCCCCGACGATACGGTTTGCA
CAAACTCGAAAAATGTTTGTGTGAAAAGCTCTGATCTAGCAGAATCTGAA
GTCGATGTCTGTGGAACCTCCGGTGGAAACCAATGTGCAACATGCACAAA
TCAGAAATATACTTGTGTTAGCAAAAATCAATTTGCGAGATGTTCCGAAT
CGGTTGTGGTCGACTCAAACATCTATGACTGCGATACTGATGAGATTTGC
AGTTCGGAAGCACTGGAAAAGTACGACAACATATGTACGCCTTCTTGTGT
CCTCGATTTTCTCGACGTGAGAGCCACTTGCAGCAACAGTGAATACACGA
CAACAACTACCGCAGCACCGACAACTGTCACACCCAGTACAGAGCAGAAA
AATAGTGCCTGTACTGAAGCTGAAAAAGATCTTCAAATACCTAAGGAAAC
CTTGTACTTCTTTACGATCTACAAGGAGGATACTTCCTGCCACACTTATC
TCTACTGCGAAAGAACTGAATCCACCGAATGGGACACTGTTTATTTGTCC
TGCCACCAACCCAAGCCATATTTCGATTCTACGACCAGCCTTTGCGTATC
GACGAAACCAACGGGATGCTCCGCAAGCTTTCTAGACCAT

BO30518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-RC 759 CG33258-PC 1..756 17..772 3780 100 Plus
CG33258-RB 759 CG33258-PB 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-RC 819 CG33258-RC 42..797 17..772 3780 100 Plus
CG33258-RB 964 CG33258-RB 42..797 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16083160..16083471 461..772 1560 100 Plus
3L 28110227 3L 16082779..16083089 150..460 1555 100 Plus
3L 28110227 3L 16082592..16082724 17..149 665 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:00:07 has no hits.

BO30518.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:26 Download gff for BO30518.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 42..797 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:40:35 Download gff for BO30518.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 42..797 17..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:59 Download gff for BO30518.complete
Subject Subject Range Query Range Percent Splice Strand
CG33258-RB 42..797 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:59 Download gff for BO30518.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16082592..16082724 17..149 100 -> Plus
3L 16082779..16083089 150..460 100 -> Plus
3L 16083160..16083471 461..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:40:35 Download gff for BO30518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16076260..16076571 461..774 99   Plus
arm_3L 16075692..16075824 17..149 100 -> Plus
arm_3L 16075879..16076189 150..460 100 -> Plus

BO30518.pep Sequence

Translation from 16 to 790

> BO30518.pep
MKRTLLILAIVFCGLAIVKALECQECLEDNDVYCVDQTSYRNCIKSKPFG
NVISCPDDTVCTNSKNVCVKSSDLAESEVDVCGTSGGNQCATCTNQKYTC
VSKNQFARCSESVVVDSNIYDCDTDEICSSEALEKYDNICTPSCVLDFLD
VRATCSNSEYTTTTTAAPTTVTPSTEQKNSACTEAEKDLQIPKETLYFFT
IYKEDTSCHTYLYCERTESTEWDTVYLSCHQPKPYFDSTTSLCVSTKPTG
CSASFLDH

BO30518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33258-PC 252 CG33258-PC 1..252 1..252 1371 100 Plus
CG33258-PB 252 CG33258-PB 1..252 1..252 1371 100 Plus
CG13075-PB 339 CG13075-PB 1..252 1..252 675 50.4 Plus
CG32024-PA 209 CG32024-PA 1..209 1..252 251 29.5 Plus
CG13312-PA 342 CG13312-PA 30..247 23..254 196 24.9 Plus