Clone BO30520 Report

Search the DGRC for BO30520

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG11321-RD
Protein status:BO30520.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO30520.complete Sequence

574 bp assembled on 2011-09-30

GenBank Submission: KX794046

> BO30520.complete
GAAGTTATCAGTCGACATGACGACCCACCAGTTGCTAAACAAGAATGTTC
GCACCATGCCCTCCTGGGTGATGGAGGCAAATGACCGCATTGGGCCCAAA
CCGCCACCCACGCCACCAAACGGTGTGGCTGGTGGTCTTCCCAAGGCGCC
TGCTCTGCCGCCCAAGGCGAAGAGCACTCCCGAGCCGGACTACGAGATCA
TCGAATTCTCCAGCCAGCAGTACTCCAACGAACCGATGAAGACCACAGTG
ATCAGAACCAAGACACCAGATAACAAACTAAAGTGCACCTTGTGCGGTTC
CCAGAATCCCTGGGTAACCTGTGCCGAGTGCGCCGGCCAAATCTTTTGCG
CCTCCTGCGACGACATGTTCCACAAGCATCCCAAACGTAAGCAGCACATG
AGAAAGGCTGTGGAGCAGGGCACACCGCCGATTCCGCCAAAGGCACAGGC
CGGTGGTGGGGCACCACCACCAGTGGCACCTCCACGACGCAGCAAACGAG
GCCTTTTGACACCGTTTCTGGGCCGCAAGGATCAGGTACGCCACTGCACG
ATCTCCGCAAGCTTTCTAGACCAT

BO30520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11321-RK 543 CG11321-PK 1..540 17..556 2700 100 Plus
CG11321-RD 543 CG11321-PD 1..540 17..556 2700 100 Plus
CG11321-RJ 8397 CG11321-PJ 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11321-RK 763 CG11321-RK 129..668 17..556 2700 100 Plus
CG11321-RD 783 CG11321-RD 149..688 17..556 2700 100 Plus
CG11321-RJ 8906 CG11321-RJ 149..667 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6770335..6770534 269..70 1000 100 Minus
2L 23513712 2L 6769932..6770083 556..405 760 100 Minus
2L 23513712 2L 6770133..6770273 407..267 705 100 Minus
2L 23513712 2L 6770591..6770644 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:02:39 has no hits.

BO30520.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:50:27 Download gff for BO30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG11321-RD 130..669 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:46:10 Download gff for BO30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG11321-RD 130..669 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:50 Download gff for BO30520.complete
Subject Subject Range Query Range Percent Splice Strand
CG11321-RD 149..688 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:50 Download gff for BO30520.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6769930..6770081 407..558 98 <- Minus
2L 6770134..6770270 270..406 100 <- Minus
2L 6770335..6770533 71..269 100 <- Minus
2L 6770591..6770644 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:46:10 Download gff for BO30520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6769930..6770081 407..558 98 <- Minus
arm_2L 6770134..6770270 270..406 100 <- Minus
arm_2L 6770335..6770533 71..269 100 <- Minus
arm_2L 6770591..6770644 17..70 100   Minus

BO30520.pep Sequence

Translation from 16 to 574

> BO30520.pep
MTTHQLLNKNVRTMPSWVMEANDRIGPKPPPTPPNGVAGGLPKAPALPPK
AKSTPEPDYEIIEFSSQQYSNEPMKTTVIRTKTPDNKLKCTLCGSQNPWV
TCAECAGQIFCASCDDMFHKHPKRKQHMRKAVEQGTPPIPPKAQAGGGAP
PPVAPPRRSKRGLLTPFLGRKDQVRHCTISASFLDH

BO30520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11321-PK 180 CG11321-PK 1..180 1..180 996 100 Plus
CG11321-PD 180 CG11321-PD 1..180 1..180 996 100 Plus
CG11321-PF 834 CG11321-PF 1..174 1..174 958 99.4 Plus
CG11321-PC 834 CG11321-PC 1..174 1..174 958 99.4 Plus
CG11321-PH 887 CG11321-PH 1..174 1..174 958 99.4 Plus