BO30531.complete Sequence
1300 bp assembled on 2011-09-30
GenBank Submission: KX796877
> BO30531.complete
GAAGTTATCAGTCGACATGTCCGACGACGACTGCGATATATTCAGTGCTG
CTCGCAAGCGGATTCCCGAAATAGCTTTGCCCAAGAATCCTTACAATCTT
GGCAATGATTCCTTCTCCAAGGAGGTGGACTACGATTTCATTGAAGACCT
CCCCAAGAAATCAACTAAAACTGGCAAACGAAAGAACCCTGCAGCGACGC
GGAAAAATCCACCCAAAAGTCAGGATGATGCTTCGCCACCAAAACAGGCA
GAACATAAGGCTGTGGAGCCAGAAGAGGATATGAGAACAGAGCGCTCCCT
ATCACCGGTATCCCTGTTGATATTGGAGATGGAAAAGAAAAATGGCCAGC
AATCGGATGTGGAGAAGCACGCCAAAGAAAATGACGTTGGTCCTGTGGCC
AGACGCACACGGTCATCGTTAAATAGGTCAGAAATGGCGCCACCACCTGT
TTCACCGACTGTGGAGGTGCCCACACAGACGAAACCAAAGAAGCGCGGCC
AAAAAAAGAGAACATCTCTAACAACCACAACCAGCAACTCTGCTTCGATG
GAGGTCTCATTGCCAAGCATTCAGAACAATGAGCACATTAGCAGACGGTG
GACGTTGGCCGAAGTTGCAGCCCGTTCCAAAGTGGTGGACAGTATTGATC
TGGTATCTGCGGTCGCTCCCCGAGTGGAGGGATTTGTTAATCTAGACTCT
GAAGACGAGGGTGAAAAGGAGGCTCCTCCTGTCGTAGAGGAAGAAAATAT
TTTTGATAACGATAATCCCACAATAGAAGTAGCTTTGTCGTGGCTTGGCG
AGATCCAGATTTATAAATTGCGGCAGCACCAAAAGTTTAAGCATCTGTTC
AAGGAGTTAGCATCACGCAATGGGATAGATGAGAATGATATAACGGTGGA
TATGTACTATAACTTCGTTGGACCTGAGGATACGCCGCACAGCATTGGTC
TCAAATCATTTCATACGCTCACTGGCCATCCAACAAAGAGTCACAATAAT
AACAACGTGGCTGCTAAAATTGACTACAATCCAGAAGCTCTTTGCCGGAA
ACCTAAGAAGTTTCAAGTTAAAGTACAGGCGGATAAATGGAAGCATCCTT
TGGTGATACCCATGAAGAAAACTGATAATTTCAAAATCATATTTATTAAG
TGTGCTGAGGAGTTGAACTGTGATCCCCGAACCATTAAATTGTTTTTTGA
CGGTGACTTGTTGGATCCAAATGATACGCCCAATAACCAGGATATGGAGG
GCAACGAAGTTATAGATCTTAAAATAAAGGCTGCAAGCTTTCTAGACCAT
BO30531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RC | 1269 | CG4449-PC | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG4449-RB | 1269 | CG4449-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG4449-RF | 1266 | CG4449-PF | 1..1263 | 17..1282 | 6250 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-RC | 1494 | CG4449-RC | 77..1342 | 17..1282 | 6330 | 100 | Plus |
| CG4449-RB | 1671 | CG4449-RB | 254..1519 | 17..1282 | 6330 | 100 | Plus |
| CG4449-RF | 1491 | CG4449-RF | 77..1339 | 17..1282 | 6250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23250606..23251104 | 571..73 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 23249741..23249963 | 1194..972 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 23250023..23250202 | 971..792 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 23250425..23250540 | 687..572 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 23250256..23250363 | 793..686 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 23249595..23249682 | 1282..1195 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 23251167..23251224 | 74..17 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1417..1463 | 738..785 | 111 | 72.9 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 1309..1355 | 738..785 | 111 | 72.9 | Plus |
BO30531.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:07 Download gff for
BO30531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 254..1519 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:48:44 Download gff for
BO30531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 254..1519 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:25 Download gff for
BO30531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4449-RB | 254..1519 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:25 Download gff for
BO30531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23249593..23249682 | 1195..1284 | 97 | <- | Minus |
| 3R | 23249741..23249963 | 972..1194 | 100 | <- | Minus |
| 3R | 23250023..23250201 | 793..971 | 100 | <- | Minus |
| 3R | 23250257..23250363 | 686..792 | 100 | <- | Minus |
| 3R | 23250427..23250540 | 572..685 | 100 | <- | Minus |
| 3R | 23250606..23251102 | 75..571 | 100 | <- | Minus |
| 3R | 23251167..23251224 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:48:44 Download gff for
BO30531.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19075315..19075404 | 1195..1284 | 97 | <- | Minus |
| arm_3R | 19075463..19075685 | 972..1194 | 100 | <- | Minus |
| arm_3R | 19075745..19075923 | 793..971 | 100 | <- | Minus |
| arm_3R | 19075979..19076085 | 686..792 | 100 | <- | Minus |
| arm_3R | 19076149..19076262 | 572..685 | 100 | <- | Minus |
| arm_3R | 19076328..19076824 | 75..571 | 100 | <- | Minus |
| arm_3R | 19076889..19076946 | 17..74 | 100 | | Minus |
BO30531.pep Sequence
Translation from 16 to 1300
> BO30531.pep
MSDDDCDIFSAARKRIPEIALPKNPYNLGNDSFSKEVDYDFIEDLPKKST
KTGKRKNPAATRKNPPKSQDDASPPKQAEHKAVEPEEDMRTERSLSPVSL
LILEMEKKNGQQSDVEKHAKENDVGPVARRTRSSLNRSEMAPPPVSPTVE
VPTQTKPKKRGQKKRTSLTTTTSNSASMEVSLPSIQNNEHISRRWTLAEV
AARSKVVDSIDLVSAVAPRVEGFVNLDSEDEGEKEAPPVVEEENIFDNDN
PTIEVALSWLGEIQIYKLRQHQKFKHLFKELASRNGIDENDITVDMYYNF
VGPEDTPHSIGLKSFHTLTGHPTKSHNNNNVAAKIDYNPEALCRKPKKFQ
VKVQADKWKHPLVIPMKKTDNFKIIFIKCAEELNCDPRTIKLFFDGDLLD
PNDTPNNQDMEGNEVIDLKIKAASFLDH
BO30531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4449-PC | 422 | CG4449-PC | 1..422 | 1..422 | 2208 | 100 | Plus |
| CG4449-PB | 422 | CG4449-PB | 1..422 | 1..422 | 2208 | 100 | Plus |
| CG4449-PD | 424 | CG4449-PD | 1..424 | 1..422 | 2195 | 99.5 | Plus |
| CG4449-PA | 424 | CG4449-PA | 1..424 | 1..422 | 2195 | 99.5 | Plus |
| CG4449-PF | 421 | CG4449-PF | 1..421 | 1..422 | 2191 | 99.8 | Plus |
