BO30534.complete Sequence
2083 bp assembled on 2013-09-16
GenBank Submission: KX794457
> BO30534.complete
GAAGTTATCAGTCGACATGAACTCAAACATTTTTCTGGGCACAGCAGAGA
ATGGCCTGCGGCATGATAAGATTGTTATACTTGATGCGGGAGCACAGTAC
GGCAAGGTTATCGACCGTAAGGTACGCGAACTCTTCGTTGAGACGGATAT
CCTTCCTCTGGATACGCCAGCTGCCACGATACGCAACAATGGCTATCGAG
GCATCATCATCTCCGGCGGACCCAACTCAGTCTACGCTGAGGATGCGCCC
AGCTATGATCCCGATCTGTTCAAGCTAAAAATACCTATGCTGGGCATCTG
CTACGGCATGCAGCTAATCAACAAAGAGTTCGGGGGCACAGTGCTCAAGA
AGGATGTTCGAGAGGATGGCCAACAAAATATCGAGATCGAGACCTCGTGC
CCGCTCTTTAGTCGCCTCAGTCGCACACAGTCCGTGCTGTTAACCCACGG
AGATAGCGTTGAGAGGGTAGGCGAGAATCTGAAGATTGGTGGCTGGTCTA
CAAACCGCATTGTGACAGCCATTTACAATGAAGTACTACGCATCTACGGC
GTACAGTTCCATCCTGAGGTGGACCTCACTATCAATGGCAAACAGATGCT
ATCGAACTTCCTGTACGAAATCTGCGAACTGACACCTAACTTTACCATGG
GTAGTCGAAAGGAGGAGTGCATACGCTATATCCGTGAGAAAGTGGGCAAC
AATAAGGTGTTGCTCCTGGTCAGCGGCGGCGTGGATTCGAGTGTCTGTGC
AGCTTTGCTCCGCCGTGCTTTGTACCCTCATCAGATAATTGCCGTGCATG
TAGATAATGGTTTCATGCGCAAGAAGGAAAGTGAAAAGGTGGAGCGTTCA
CTGCGCGATATTGGCATTGATTTAATCGTCCGAAAAGAAGGCTACACGTT
CCTTAAAGGCACCACGCAGGTCAAGAGGCCCGGACAGTACTCCGTGGTGG
AAACGCCGATGTTATGTCAGACATACAATCCGGAGGAAAAACGCAAGATA
ATTGGTGATATATTCGTCAAGGTGACCAATGATGTAGTAGCCGAATTGAA
ACTAAAGCCCGAAGAAGTTATGTTGGCCCAGGGAACCCTCCGACCAGATC
TGATCGAGTCCGCCTCTAGCATGGTGAGCACGAATGCAGAAACAATCAAA
ACGCACCACAATGACACGGATCTGATCAGAGAGCTTCGTAACGCAGGACG
TGTGGTTGAGCCCCTTTGCGACTTTCATAAGGATGAAGTGCGCGACCTTG
GCAATGATCTTGGCCTGCCTCAAGAGCTTGTGGAGAGGCAACCCTTTCCG
GGTCCTGGCCTGGCAATCCGCGTCCTTTGCGCTGAGGAGGCATACATGGA
AAAGGACTACTCAGAAACTCAGGTTATTATCCGCGTGATTGTAGACTACA
AGAATAAACTGCAGAAGAACCATGCTTTGATCAACCGCGTAACGGCGGCC
ACGAGCGAGGCGGAACAGAAAGACCTTATGCGTATCTCATCGAACTCGCA
GATCCAGGCAACTTTGCTGCCCATCCGATCAGTGGGCGTGCAAGGTGATA
AACGGTCATATAGCTACGTAGTAGGCCTATCCACGAGCCAGGAGCCCAAC
TGGCAGGATCTTCTCTTCCTCGCCAAAATCATACCGCGAATTCTGCACAA
CGTGAACAGGGTGTGCTATATCTTCGGCGAACCCGTACAGTATCTAGTGA
CGGATATTACGCACACCACACTGAATACTGTAGTTCTTTCGCAGCTGAGG
CAAGCCGATGATATTGCCAATGAAATCATAATGCAAGCTGGACTATACCG
GAAGATCTCGCAGATGCCTGTTGTTCTCATACCCGTGCACTTTGACCGCG
ATCCCATTAACCGCACACCCTCGTGCAGAAGGTCGGTAGTGCTGCGTCCG
TTCATAACGAACGACTTTATGACTGGTGTGCCGGCTGAGCCCGGATCCGT
GCAAATGCCTTTGCAAGTCCTAAATCAAATTGTACGCGATATATCCAAGC
TGGATGGAATCTCGAGGGTGCTGTACGACTTGACAGCCAAGCCGCCGGGC
ACCACCGAATGGGAAGCAAGCTTTCTAGACCAT
BO30534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bur-RC | 2052 | CG9242-PC | 1..2049 | 17..2065 | 10245 | 100 | Plus |
| bur-RB | 2052 | CG9242-PB | 1..2049 | 17..2065 | 10245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bur-RC | 3116 | CG9242-RC | 373..2421 | 17..2065 | 10245 | 100 | Plus |
| bur-RB | 2915 | CG9242-RB | 373..2421 | 17..2065 | 10245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21175280..21175683 | 1774..1371 | 2020 | 100 | Minus |
| 2L | 23513712 | 2L | 21176007..21176377 | 1179..809 | 1855 | 100 | Minus |
| 2L | 23513712 | 2L | 21177205..21177511 | 411..105 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 21176671..21176973 | 712..410 | 1515 | 100 | Minus |
| 2L | 23513712 | 2L | 21175740..21175937 | 1373..1176 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 21175031..21175224 | 1968..1775 | 970 | 100 | Minus |
| 2L | 23513712 | 2L | 21176507..21176606 | 811..712 | 500 | 100 | Minus |
| 2L | 23513712 | 2L | 21174877..21174975 | 2065..1967 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 21177569..21177660 | 108..17 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:04:08 has no hits.
BO30534.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:17 Download gff for
BO30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bur-RB | 373..2421 | 17..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:34 Download gff for
BO30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bur-RB | 373..2421 | 17..2067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:34 Download gff for
BO30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21175033..21175224 | 1775..1966 | 100 | <- | Minus |
| 2L | 21174874..21174975 | 1967..2067 | 98 | <- | Minus |
| 2L | 21175280..21175681 | 1373..1774 | 100 | <- | Minus |
| 2L | 21175741..21175933 | 1180..1372 | 100 | <- | Minus |
| 2L | 21176007..21176376 | 810..1179 | 100 | <- | Minus |
| 2L | 21176509..21176605 | 713..809 | 100 | <- | Minus |
| 2L | 21176671..21176971 | 412..712 | 100 | <- | Minus |
| 2L | 21177205..21177509 | 107..411 | 100 | <- | Minus |
| 2L | 21177571..21177660 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:17 Download gff for
BO30534.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21174874..21174975 | 1967..2067 | 98 | <- | Minus |
| arm_2L | 21175033..21175224 | 1775..1966 | 100 | <- | Minus |
| arm_2L | 21175280..21175681 | 1373..1774 | 100 | <- | Minus |
| arm_2L | 21175741..21175933 | 1180..1372 | 100 | <- | Minus |
| arm_2L | 21176007..21176376 | 810..1179 | 100 | <- | Minus |
| arm_2L | 21176509..21176605 | 713..809 | 100 | <- | Minus |
| arm_2L | 21176671..21176971 | 412..712 | 100 | <- | Minus |
| arm_2L | 21177205..21177509 | 107..411 | 100 | <- | Minus |
| arm_2L | 21177571..21177660 | 17..106 | 100 | | Minus |
BO30534.pep Sequence
Translation from 16 to 2083
> BO30534.pep
MNSNIFLGTAENGLRHDKIVILDAGAQYGKVIDRKVRELFVETDILPLDT
PAATIRNNGYRGIIISGGPNSVYAEDAPSYDPDLFKLKIPMLGICYGMQL
INKEFGGTVLKKDVREDGQQNIEIETSCPLFSRLSRTQSVLLTHGDSVER
VGENLKIGGWSTNRIVTAIYNEVLRIYGVQFHPEVDLTINGKQMLSNFLY
EICELTPNFTMGSRKEECIRYIREKVGNNKVLLLVSGGVDSSVCAALLRR
ALYPHQIIAVHVDNGFMRKKESEKVERSLRDIGIDLIVRKEGYTFLKGTT
QVKRPGQYSVVETPMLCQTYNPEEKRKIIGDIFVKVTNDVVAELKLKPEE
VMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNAGRVVEPL
CDFHKDEVRDLGNDLGLPQELVERQPFPGPGLAIRVLCAEEAYMEKDYSE
TQVIIRVIVDYKNKLQKNHALINRVTAATSEAEQKDLMRISSNSQIQATL
LPIRSVGVQGDKRSYSYVVGLSTSQEPNWQDLLFLAKIIPRILHNVNRVC
YIFGEPVQYLVTDITHTTLNTVVLSQLRQADDIANEIIMQAGLYRKISQM
PVVLIPVHFDRDPINRTPSCRRSVVLRPFITNDFMTGVPAEPGSVQMPLQ
VLNQIVRDISKLDGISRVLYDLTAKPPGTTEWEASFLDH
BO30534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bur-PC | 683 | CG9242-PC | 1..683 | 1..683 | 3503 | 100 | Plus |
| bur-PB | 683 | CG9242-PB | 1..683 | 1..683 | 3503 | 100 | Plus |
