Clone BO30535 Report

Search the DGRC for BO30535

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:305
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG4041-RB
Protein status:BO30535.pep: Imported from assembly
Sequenced Size:2491

Clone Sequence Records

BO30535.complete Sequence

2491 bp assembled on 2013-09-16

GenBank Submission: KX794859

> BO30535.complete
GAAGTTATCAGTCGACATGGGCACGCGGGAGCGCGAAAGGGAGTGCCGCC
TGTGCGCGGTCACCTTCTTCGCGAAACTGCATCCCGGCGACGTGTGCGGC
AGCAACGGCCTGCCCCTAACGCCCAACTCGATTGCGATCCTGGGGCGTGC
CCAGAAACTGAAGGAGCTGCAGGACGAGCACCTGTGCCAGTACCTGGATG
TGATCCGCGGCAAACACGAGCGCACCATTGTGGTTTCGGAGTATCTGGGA
CTCTCACTGGAGGACTACGCCATGCGTCATCCACCGCTGGCCATTGCCCA
GATACTGAGAATCTTCTACCAGGTGGCGTGCGGCATCAATGTGCTGAGTC
GACACCATCTGGTGGCCCACAACGTGGAGCCCAAGCACATTCTACTCTCC
AGCGATGGGCAGCGGGTGAAGCTCTTCAACTACGGGCTGCATCACATGAC
CAAGGGCGGTGCCTATGTGCCCTTTCCCATTGGCAACATTCGCTACATGG
CACCCGAACGACTGCTCGGTCTGAATGGCAATGTGAAGAGCGACGTTTGG
TCGCTGGCCCTGGTAATGGTGGAGCTAATATTGCAGATCGAGCTGTGGCC
GAAGCTCAAGCTCTCGAATGTGGTTAGAAAGATCCTGGCCTTTGGCAAGA
GCAACGGGGCGTTGGAGAAGATTGCGCGAGAGCACCAGTGTCACGAGCGC
TATGTGCAGATGGATCAGCGCCTGCGACAGCTGCTGGAGAGCTGTTTAAG
TGTACTGCCCAAGAGGAGACCACTGCCAGGTGAGCTCTTGGAACATCCCA
TTTTCGAGGAAGTCCTATTGGATTTGAAGAAACAGAAGATGCAGCCACTG
AGCCCAGAAACCGAACATTTACCGCTGCTGCTGCGATGTCCCTTGTCGCA
GATCTACCACCTGTGGCAACTGGCCGGCGGAGATGTGCAGGCGGAGCTGA
AAAAGGAGGGCCTCATCCGGAGTGAGGCACCCATTTTGGGTCTGCCACAA
ATCGTTCGCCTGAGCGGCGCCAGCGTTTGTCCCGGCCGAAGCCAGGCGCA
GCTGATGGACGATCGCGTGGTGCCGCTGCGCCTGAAGGCGCTGCTCCAGC
GACTGAGTGGCCTGCCGGCCGCAGTCTACTTTCCCCTGCTCCACTCGCCG
CGTTTTCCCGCCCACTTTGCCCGCGAATTGCAGGAACTGCCGCTGGTGAT
CCGCGAAAAGGACATCGAGTATCAGTTTCAGCGCGTGCGACTTTTTGCGC
GCCTGCTCCAGGGCTATCCGCATACGGCGGAGCAGCTGCAGCGCGAGGCA
GCCGTGGATGTGCCGCCGCTACTGAGGGGTCCCATTTGGGCCGCCCTGCT
GGAGGTTGTGCCCAATGGCAGTTACGCGAAGATCGACAAGTTTACGTCTA
CGAGCACGGATCGGCAGATCGAGGTGGATATACCGCGCTGCCATCAGTAC
GATGAGCTGCTCTCCTCGCCGGATGGCCACCGCAAGCTGAGGCGGCTGCT
CAAGGCCTGGGTCACCGCCCATCCGCAGTACGTCTACTGGCAGGGACTGG
ACTCACTGACGGCACCGTTTCTCTATCTCAACTTTAACAATGAAGAGTTG
GCCTTCCTCAGCTTGTTCAAGTTCATTCCAAAGTATCTGCAATGGTTCTT
TCTCAAGGATAATTCGGCGGTGATCAAGGAGTACCTGAGCAAGTTCTCCC
AGCTGACTGCCTTCCATGAGCCGCTTCTCGCTCAGCATTTGGCCAGCATT
AGCTTTATACCCGAGTTGTTTGCCATCCCGTGGTTCCTAACCATGTTCTC
GCATGTATTCCCGCTGCACAAGATCCTGCATTTGTGGGATAAACTCATGC
TGGGCGATAGTTCGTATCCGCTGTTCATTGGCATCGCCATATTGCGCCAG
CTGAGAAGCACGCTGCTCACCTCCGGTTTCAACGAGTGCATCCTGCTCTT
CTCCGACCTGCCCGATATCGTGATGGATGGCTGTGTGCTGGAGTCACAGA
AGATGTACGAAGCCACACCGAAGAGTATTACTCATCGCCAGCACGCGTTG
CGCCTCCAGCCGCCACAGGCGTTGGACATTGGCGTGGCGGATGTCGAGCT
GAAGCACCTGCAACAGGAGCAGTGCCCCCGGATCAGCGCCAAGGATGTGC
AATTCCTGTTGGACAATTCGCCAGCGGAGCTGGCCCTCATCGATTTGCGC
AGTGTAGTCGAGTTCGGACGCGTCCATGTGCCGCATAGCATCAACATACC
GTTCGCCACCGTCCAGTTGGGTGAACAGCGATTGGAGGCCCTGCAGGTGC
CCCAATTGGAGGCGCAGCTCCGCGGCAAGATCGTCGTCTGCGTGAGCAAT
ATCCATCAGCACTCCGTGGAGTTCTCGCACTTTCTGGTGGCCTGCGGTGT
CCAGCGCACCTGTATCCTTCACAAAGGATTCAACGTCCTGCACTCCATCG
AGCCAAATATACTCATCTCGAATGCAAGCTTTCTAGACCAT

BO30535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-RB 2460 CG4041-PB 1..2457 17..2473 12285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-RB 2723 CG4041-RB 125..2582 16..2473 12290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4916545..4917922 1595..218 6890 100 Minus
X 23542271 X 4915586..4915883 2371..2074 1490 100 Minus
X 23542271 X 4915942..4916214 2075..1803 1365 100 Minus
X 23542271 X 4916285..4916493 1802..1594 1045 100 Minus
X 23542271 X 4918121..4918323 218..16 1015 100 Minus
X 23542271 X 4915421..4915524 2473..2370 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:04:12 has no hits.

BO30535.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:19 Download gff for BO30535.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 126..2582 17..2475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:35 Download gff for BO30535.complete
Subject Subject Range Query Range Percent Splice Strand
CG4041-RB 126..2582 17..2475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:35 Download gff for BO30535.complete
Subject Subject Range Query Range Percent Splice Strand
X 4918121..4918322 17..218 100   Minus
X 4915418..4915522 2372..2475 98 <- Minus
X 4915586..4915882 2075..2371 100 <- Minus
X 4915943..4916214 1803..2074 100 <- Minus
X 4916285..4916491 1596..1802 100 <- Minus
X 4916545..4917921 219..1595 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:19 Download gff for BO30535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4809451..4809555 2372..2475 98 <- Minus
arm_X 4809619..4809915 2075..2371 100 <- Minus
arm_X 4809976..4810247 1803..2074 100 <- Minus
arm_X 4810318..4810524 1596..1802 100 <- Minus
arm_X 4810578..4811954 219..1595 100 <- Minus
arm_X 4812154..4812355 17..218 100   Minus

BO30535.pep Sequence

Translation from 16 to 2491

> BO30535.pep
MGTRERERECRLCAVTFFAKLHPGDVCGSNGLPLTPNSIAILGRAQKLKE
LQDEHLCQYLDVIRGKHERTIVVSEYLGLSLEDYAMRHPPLAIAQILRIF
YQVACGINVLSRHHLVAHNVEPKHILLSSDGQRVKLFNYGLHHMTKGGAY
VPFPIGNIRYMAPERLLGLNGNVKSDVWSLALVMVELILQIELWPKLKLS
NVVRKILAFGKSNGALEKIAREHQCHERYVQMDQRLRQLLESCLSVLPKR
RPLPGELLEHPIFEEVLLDLKKQKMQPLSPETEHLPLLLRCPLSQIYHLW
QLAGGDVQAELKKEGLIRSEAPILGLPQIVRLSGASVCPGRSQAQLMDDR
VVPLRLKALLQRLSGLPAAVYFPLLHSPRFPAHFARELQELPLVIREKDI
EYQFQRVRLFARLLQGYPHTAEQLQREAAVDVPPLLRGPIWAALLEVVPN
GSYAKIDKFTSTSTDRQIEVDIPRCHQYDELLSSPDGHRKLRRLLKAWVT
AHPQYVYWQGLDSLTAPFLYLNFNNEELAFLSLFKFIPKYLQWFFLKDNS
AVIKEYLSKFSQLTAFHEPLLAQHLASISFIPELFAIPWFLTMFSHVFPL
HKILHLWDKLMLGDSSYPLFIGIAILRQLRSTLLTSGFNECILLFSDLPD
IVMDGCVLESQKMYEATPKSITHRQHALRLQPPQALDIGVADVELKHLQQ
EQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPHSINIPFATVQ
LGEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEFSHFLVACGVQRTCI
LHKGFNVLHSIEPNILISNASFLDH

BO30535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4041-PB 819 CG4041-PB 1..819 1..819 4258 100 Plus
AMPKalpha-PC 582 CG3051-PC 78..220 46..188 165 27.8 Plus
AMPKalpha-PB 582 CG3051-PB 78..220 46..188 165 27.8 Plus
AMPKalpha-PA 582 CG3051-PA 78..220 46..188 165 27.8 Plus