BO30535.complete Sequence
2491 bp assembled on 2013-09-16
GenBank Submission: KX794859
> BO30535.complete
GAAGTTATCAGTCGACATGGGCACGCGGGAGCGCGAAAGGGAGTGCCGCC
TGTGCGCGGTCACCTTCTTCGCGAAACTGCATCCCGGCGACGTGTGCGGC
AGCAACGGCCTGCCCCTAACGCCCAACTCGATTGCGATCCTGGGGCGTGC
CCAGAAACTGAAGGAGCTGCAGGACGAGCACCTGTGCCAGTACCTGGATG
TGATCCGCGGCAAACACGAGCGCACCATTGTGGTTTCGGAGTATCTGGGA
CTCTCACTGGAGGACTACGCCATGCGTCATCCACCGCTGGCCATTGCCCA
GATACTGAGAATCTTCTACCAGGTGGCGTGCGGCATCAATGTGCTGAGTC
GACACCATCTGGTGGCCCACAACGTGGAGCCCAAGCACATTCTACTCTCC
AGCGATGGGCAGCGGGTGAAGCTCTTCAACTACGGGCTGCATCACATGAC
CAAGGGCGGTGCCTATGTGCCCTTTCCCATTGGCAACATTCGCTACATGG
CACCCGAACGACTGCTCGGTCTGAATGGCAATGTGAAGAGCGACGTTTGG
TCGCTGGCCCTGGTAATGGTGGAGCTAATATTGCAGATCGAGCTGTGGCC
GAAGCTCAAGCTCTCGAATGTGGTTAGAAAGATCCTGGCCTTTGGCAAGA
GCAACGGGGCGTTGGAGAAGATTGCGCGAGAGCACCAGTGTCACGAGCGC
TATGTGCAGATGGATCAGCGCCTGCGACAGCTGCTGGAGAGCTGTTTAAG
TGTACTGCCCAAGAGGAGACCACTGCCAGGTGAGCTCTTGGAACATCCCA
TTTTCGAGGAAGTCCTATTGGATTTGAAGAAACAGAAGATGCAGCCACTG
AGCCCAGAAACCGAACATTTACCGCTGCTGCTGCGATGTCCCTTGTCGCA
GATCTACCACCTGTGGCAACTGGCCGGCGGAGATGTGCAGGCGGAGCTGA
AAAAGGAGGGCCTCATCCGGAGTGAGGCACCCATTTTGGGTCTGCCACAA
ATCGTTCGCCTGAGCGGCGCCAGCGTTTGTCCCGGCCGAAGCCAGGCGCA
GCTGATGGACGATCGCGTGGTGCCGCTGCGCCTGAAGGCGCTGCTCCAGC
GACTGAGTGGCCTGCCGGCCGCAGTCTACTTTCCCCTGCTCCACTCGCCG
CGTTTTCCCGCCCACTTTGCCCGCGAATTGCAGGAACTGCCGCTGGTGAT
CCGCGAAAAGGACATCGAGTATCAGTTTCAGCGCGTGCGACTTTTTGCGC
GCCTGCTCCAGGGCTATCCGCATACGGCGGAGCAGCTGCAGCGCGAGGCA
GCCGTGGATGTGCCGCCGCTACTGAGGGGTCCCATTTGGGCCGCCCTGCT
GGAGGTTGTGCCCAATGGCAGTTACGCGAAGATCGACAAGTTTACGTCTA
CGAGCACGGATCGGCAGATCGAGGTGGATATACCGCGCTGCCATCAGTAC
GATGAGCTGCTCTCCTCGCCGGATGGCCACCGCAAGCTGAGGCGGCTGCT
CAAGGCCTGGGTCACCGCCCATCCGCAGTACGTCTACTGGCAGGGACTGG
ACTCACTGACGGCACCGTTTCTCTATCTCAACTTTAACAATGAAGAGTTG
GCCTTCCTCAGCTTGTTCAAGTTCATTCCAAAGTATCTGCAATGGTTCTT
TCTCAAGGATAATTCGGCGGTGATCAAGGAGTACCTGAGCAAGTTCTCCC
AGCTGACTGCCTTCCATGAGCCGCTTCTCGCTCAGCATTTGGCCAGCATT
AGCTTTATACCCGAGTTGTTTGCCATCCCGTGGTTCCTAACCATGTTCTC
GCATGTATTCCCGCTGCACAAGATCCTGCATTTGTGGGATAAACTCATGC
TGGGCGATAGTTCGTATCCGCTGTTCATTGGCATCGCCATATTGCGCCAG
CTGAGAAGCACGCTGCTCACCTCCGGTTTCAACGAGTGCATCCTGCTCTT
CTCCGACCTGCCCGATATCGTGATGGATGGCTGTGTGCTGGAGTCACAGA
AGATGTACGAAGCCACACCGAAGAGTATTACTCATCGCCAGCACGCGTTG
CGCCTCCAGCCGCCACAGGCGTTGGACATTGGCGTGGCGGATGTCGAGCT
GAAGCACCTGCAACAGGAGCAGTGCCCCCGGATCAGCGCCAAGGATGTGC
AATTCCTGTTGGACAATTCGCCAGCGGAGCTGGCCCTCATCGATTTGCGC
AGTGTAGTCGAGTTCGGACGCGTCCATGTGCCGCATAGCATCAACATACC
GTTCGCCACCGTCCAGTTGGGTGAACAGCGATTGGAGGCCCTGCAGGTGC
CCCAATTGGAGGCGCAGCTCCGCGGCAAGATCGTCGTCTGCGTGAGCAAT
ATCCATCAGCACTCCGTGGAGTTCTCGCACTTTCTGGTGGCCTGCGGTGT
CCAGCGCACCTGTATCCTTCACAAAGGATTCAACGTCCTGCACTCCATCG
AGCCAAATATACTCATCTCGAATGCAAGCTTTCTAGACCAT
BO30535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4041-RB | 2460 | CG4041-PB | 1..2457 | 17..2473 | 12285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4041-RB | 2723 | CG4041-RB | 125..2582 | 16..2473 | 12290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4916545..4917922 | 1595..218 | 6890 | 100 | Minus |
X | 23542271 | X | 4915586..4915883 | 2371..2074 | 1490 | 100 | Minus |
X | 23542271 | X | 4915942..4916214 | 2075..1803 | 1365 | 100 | Minus |
X | 23542271 | X | 4916285..4916493 | 1802..1594 | 1045 | 100 | Minus |
X | 23542271 | X | 4918121..4918323 | 218..16 | 1015 | 100 | Minus |
X | 23542271 | X | 4915421..4915524 | 2473..2370 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:04:12 has no hits.
BO30535.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:19 Download gff for
BO30535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4041-RB | 126..2582 | 17..2475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:35 Download gff for
BO30535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4041-RB | 126..2582 | 17..2475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:35 Download gff for
BO30535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4918121..4918322 | 17..218 | 100 | | Minus |
X | 4915418..4915522 | 2372..2475 | 98 | <- | Minus |
X | 4915586..4915882 | 2075..2371 | 100 | <- | Minus |
X | 4915943..4916214 | 1803..2074 | 100 | <- | Minus |
X | 4916285..4916491 | 1596..1802 | 100 | <- | Minus |
X | 4916545..4917921 | 219..1595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:19 Download gff for
BO30535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4809451..4809555 | 2372..2475 | 98 | <- | Minus |
arm_X | 4809619..4809915 | 2075..2371 | 100 | <- | Minus |
arm_X | 4809976..4810247 | 1803..2074 | 100 | <- | Minus |
arm_X | 4810318..4810524 | 1596..1802 | 100 | <- | Minus |
arm_X | 4810578..4811954 | 219..1595 | 100 | <- | Minus |
arm_X | 4812154..4812355 | 17..218 | 100 | | Minus |
BO30535.pep Sequence
Translation from 16 to 2491
> BO30535.pep
MGTRERERECRLCAVTFFAKLHPGDVCGSNGLPLTPNSIAILGRAQKLKE
LQDEHLCQYLDVIRGKHERTIVVSEYLGLSLEDYAMRHPPLAIAQILRIF
YQVACGINVLSRHHLVAHNVEPKHILLSSDGQRVKLFNYGLHHMTKGGAY
VPFPIGNIRYMAPERLLGLNGNVKSDVWSLALVMVELILQIELWPKLKLS
NVVRKILAFGKSNGALEKIAREHQCHERYVQMDQRLRQLLESCLSVLPKR
RPLPGELLEHPIFEEVLLDLKKQKMQPLSPETEHLPLLLRCPLSQIYHLW
QLAGGDVQAELKKEGLIRSEAPILGLPQIVRLSGASVCPGRSQAQLMDDR
VVPLRLKALLQRLSGLPAAVYFPLLHSPRFPAHFARELQELPLVIREKDI
EYQFQRVRLFARLLQGYPHTAEQLQREAAVDVPPLLRGPIWAALLEVVPN
GSYAKIDKFTSTSTDRQIEVDIPRCHQYDELLSSPDGHRKLRRLLKAWVT
AHPQYVYWQGLDSLTAPFLYLNFNNEELAFLSLFKFIPKYLQWFFLKDNS
AVIKEYLSKFSQLTAFHEPLLAQHLASISFIPELFAIPWFLTMFSHVFPL
HKILHLWDKLMLGDSSYPLFIGIAILRQLRSTLLTSGFNECILLFSDLPD
IVMDGCVLESQKMYEATPKSITHRQHALRLQPPQALDIGVADVELKHLQQ
EQCPRISAKDVQFLLDNSPAELALIDLRSVVEFGRVHVPHSINIPFATVQ
LGEQRLEALQVPQLEAQLRGKIVVCVSNIHQHSVEFSHFLVACGVQRTCI
LHKGFNVLHSIEPNILISNASFLDH
BO30535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4041-PB | 819 | CG4041-PB | 1..819 | 1..819 | 4258 | 100 | Plus |
AMPKalpha-PC | 582 | CG3051-PC | 78..220 | 46..188 | 165 | 27.8 | Plus |
AMPKalpha-PB | 582 | CG3051-PB | 78..220 | 46..188 | 165 | 27.8 | Plus |
AMPKalpha-PA | 582 | CG3051-PA | 78..220 | 46..188 | 165 | 27.8 | Plus |