BO30539.complete Sequence
1078 bp assembled on 2011-09-30
GenBank Submission: KX796365
> BO30539.complete
GAAGTTATCAGTCGACATGCTGCCGCCGATGGCTTTTGCCTTACCCACAC
GTCGTGTTCCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCAC
AAGCCGGCCAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGG
CTTGGTGAAGGGAGCCGCCGAGGGTCAGGGACTTGGAAACGACTTCCTTT
CGCACATCAGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAG
GATCCGGATGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCT
GGAGATCATCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCA
AGAACTTGGACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAG
CTCAAGCCCGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGA
TCAGAAGCGTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGG
CCTTGAACAAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTG
AACCTTTCGGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAA
GATCAAGGAATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCT
TCTCCGGCGCCTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGC
AAGGCCTACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGT
TGTGACCGGCTACAAGGGCCTGCAGCTGGAGTACTTCTTCACCGCCGGGC
CGGATGAAGTGAAGGCATGGACCATCCAGAAGGGCACCAAGGCTCCCCAA
GCCGCCGGACGCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGA
GGTGATGCACTTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCA
AGGCCGCTGGCAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGAT
GGCGACATCATATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGC
CAAGAAGAAAGCAAGCTTTCTAGACCAT
BO30539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RB | 1047 | CG1354-PB | 1..1044 | 17..1060 | 5130 | 99.4 | Plus |
| CG1354-RE | 1194 | CG1354-PE | 182..1191 | 51..1060 | 4960 | 99.4 | Plus |
| CG1354-RA | 1194 | CG1354-PA | 182..1191 | 51..1060 | 4960 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-RB | 1257 | CG1354-RB | 21..1064 | 17..1060 | 5130 | 99.4 | Plus |
| CG1354-RE | 1491 | CG1354-RE | 286..1295 | 51..1060 | 4960 | 99.4 | Plus |
| CG1354-RA | 1498 | CG1354-RA | 296..1305 | 51..1060 | 4960 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9781159..9781725 | 494..1060 | 2775 | 99.3 | Plus |
| X | 23542271 | X | 9780509..9780892 | 110..493 | 1890 | 99.5 | Plus |
| X | 23542271 | X | 9780207..9780301 | 17..111 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:06:37 has no hits.
BO30539.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-30 10:53:09 Download gff for
BO30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1064 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:54:43 Download gff for
BO30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1064 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:05 Download gff for
BO30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1354-RB | 21..1064 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:05 Download gff for
BO30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9780511..9780892 | 112..493 | 99 | -> | Plus |
| X | 9780207..9780301 | 17..111 | 100 | -> | Plus |
| X | 9781159..9781725 | 494..1062 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:54:43 Download gff for
BO30539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9674240..9674334 | 17..111 | 100 | -> | Plus |
| arm_X | 9674544..9674925 | 112..493 | 99 | -> | Plus |
| arm_X | 9675192..9675758 | 494..1062 | 98 | | Plus |
BO30539.pep Sequence
Translation from 16 to 1078
> BO30539.pep
MLPPMAFALPTRRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGA
AEGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISE
ELRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHL
RFEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWI
DKNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYK
GLQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFE
DFKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKKAS
FLDH
BO30539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1354-PB | 348 | CG1354-PB | 1..348 | 1..348 | 1824 | 100 | Plus |
| CG1354-PE | 397 | CG1354-PE | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PA | 397 | CG1354-PA | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PD | 397 | CG1354-PD | 62..397 | 13..348 | 1761 | 100 | Plus |
| CG1354-PC | 397 | CG1354-PC | 62..397 | 13..348 | 1761 | 100 | Plus |
