BO30543.complete Sequence
3988 bp assembled on 2013-09-16
GenBank Submission: KX796190
> BO30543.complete
GAAGTTATCAGTCGACATGTCGTCAATTGAATCGCTGTCCATCCAGGGAA
TACGGAGTTTCGGCACCTATGCCGACGATCTTCAGAGTATAAAGTTTTCC
TCGCCGGTTACCCTGATTCTGGGCGAGAACGGATGCGGAAAGACGACCGT
GGTAGAGTGTCTCAAGTACGCCTTGACCGGCGAGTGTCCGCCGGGCAGTG
ATCGGGGCAAGAGTTTCGTCCATGACCCTAAGATCTTTGGGCTAAACGAG
GTGCTAGCGCAGATCAAGATGCAGGTGCGGGACAGGCGGGGTGCCCAAGT
GTCCATCTGCCGCACCATGAAGGTGTCCAAGAAGCGCAACAAAATGTCCT
TTGAAACAATGGACTCCACCATCAACTTCCTGACCGGCGCTGGACAGTCG
AAGCGCGAAAAGCAGGACTCGCTAAGCGGCCGCTCCGTGGATATCGACGT
GGCCATCTCGGACTTCATGGGTGTCTCCAAGGCTATTATCAACAATGTCC
TGTTTTGCCATCAAGAGGACTCCAGTTGGCCGCTGGACGAATCAAAAAAG
TTAAAGGAAAAGTTCGATGCCATATTCGGCATCACCGAGTACAATAAGGC
GCTGGATAAAATCATAAAGCTTCGCAAGGAGGCTATGGAAGAGCTAAAAA
TAAAGGAGGCCAACATAAAGCATGTGGCCTACCTCAAGCAGGAAATGGAG
GTTAAAACTTTGAACCTACAAAAGGCGCAGAGGAAATGCGACGCAATTAA
GGCGCAGTGCAGTGAGTGCGAGGAGGAAATGAAGCCGATTGAGGCCAGGC
TGGTGGAAATCCGAAATGTAGAGTTCGAAATTGGGAAGTATCAAGCGCAG
AAAGTCGAAATGGACACCAAGCACAAAAACTGCAAGGATCAGATATCCAC
TCTAACCCTGAAGATCAAGAAACCCTTTAGAGGTACCCTGGATGAATTGG
ATCAAGAGATAAGTAACTTTGATCAGCGCATGCTAGAGATGCGTCAGAAA
CGCACCGAAGTGGAGGGGGATTTGTCGCAGATTAAGAGGTCCAGTGTCGC
TGAGCAAGAAAAGTTGGGCACACAGGACCGGAAGCATTGCCTGGCTAAAC
AACGGCATCAGAGCGAGCTGGCTTGTCGGGCACAGCTTCTGAAGCGGGTT
AAGGAGTTCTGCCGGGAACTCCATATACCCATCGATTGTGATCTTGTGGA
GCAGCCTGAGAAAATGGGAGAAGTCCTTCGGGATATCGAGGCGATGATTA
TAACCAAGCACTGCGAAATCACAGAGATAGTCGAGCAGAACGAGAAGGCC
GATCGGAGCCGGCAAGTCAAGATCGACGAGCTTCGCATTGAGCTGACCAA
GTCGGAGCAAAGTGTAACCGCGCAGGAGAAGCAGCGGGAGTCCAGCAAGC
GAGAGAGTGAAACTCTTGGAGTGGAGATAAAGAAAATCGAAACATCCATG
CAAGACCTAAAGAAGCTTGAGAAAGAAATAAACGAGGTTAATGAGTTGTA
TGAGAGCGCTACGAAAAACATTGACCAACAGGCTATAAAAGATGCCATTG
CCAGAAAGAAAGCCAGCATTGCCGAGAATCAGATTCAGTTTAAGAAGCTG
GACGAACAATTGACATTCCTAGGCTCCATGGCCAAGCTAGTTGCCGAGTG
TTCCCTGAAGCAAAAGGAGCTCGATAAAAAGAACCAAGAGGTACATCGCG
TGCGCAGCCGACACTCTGATCATTTCGGGAAGTTGTTCAAGGAACCAATT
ACCTGCAATTATCGCCGATCGATGCAGGTGGTCTACGAAAAACTTCGTCG
CGAGATCCAAGAACTTAACGAGAAGGCAAACACTCAGAAACTAAAAGAAC
AGTCATACGAAATCAAGCGCAAAAACCTCATTAGTGATATTTCGCGAATG
GAAAAGGAGTTAAAGGACAGCGAGGAGTTAATATATCAAAAGTGCCGGTC
AACTCCGTATGATGATCTGCTGGAGCGAAGTAAGACGACTATTTCCAAAT
TGCAATTCGACCATGGCGCCCTTAAATCGTCCGAGGCCCTTTATAAGAAG
TATATACAGAAAATGGATGAGGAGCCAAGTTGCCCATTATGCCACCACAA
CATGACTAGTGATGAGGCGTGCGACTTGACTAGCGAGCTAACGGATGAGA
TCCAAAAGTTGCCCGATAATATCACTAGAGCTGAGAAAGCCTTAAAGGCG
GAGCAGATAAAATATGAGAACTTATTGCAACTTAAACCCACCATTCTTAA
GGTCAAGGAGCTTAAGGATTCGTTGCCACAAAAGAAGGAGGAACTGAAAA
AGGTGGAGGAGCTGCTAGGAGACAGCGTCAGCGAATATGAAACATTAATT
GCTCTTATTGGGGAGCCAACTCATAATATGGAGTTGGCGAATTCAATGAT
GGGTGATATGTCCCTATTAGATGAGGCTTTAAAAGATTCGGCGCGGCTCA
CAAAAGATCTGGATCTGCAAAAGGGACAGTTACCCGCTTCCTATGATTCA
AGTGTGTCTATGGATGATCTGCAGGCGGAGAAGAGTAAGGTTTCAAAAGA
GTTGGAGACGGAACGTAAGGAGTTGGAATCTGCTCAGAATGCAGTCCAGC
AGCAAATGGATGCCCTTAATCGTTTGCGCGAAAAGAAGAATAGTTTAAAA
GACAGGCAAATACATCTTCGAGAGGGTCTTCAAAGCTTGCCACAGTTAAA
GGAACGTTTGGAGAAGCTCAATAGTTTCCTTACAACAGTAGCCTCTGAAA
TCAGCGAATTAAAGGCGAAAATCCAGCCTCTTAAGCTGAATTTACGAGCA
GCCATAGAAGAAAAAGAGCGCTTGAAGAAAAGCGAAAGTGAAAAGTTAGC
GCAGCTGAATTCCAAGTACAATTCCTACAAAAGCACAGATCACGACATAC
AAAGATTGAACAAAGAAGCTGAGGACTACGCCAAATTGGATCTTCGAAAT
GAAATCAAAAAGCTTGATGAAATCATAATGGCCTCCAAAGATAAGTTAAG
GAAATTGGAAGCCGAAATATCTTTAAAAACTGATGAGCTGGAAACAATTA
AAACAGAGTGCTCCAATCAGCAGACCGTTGAACGGGATTTGAAGGATAAC
CGTGAGCTAAAACAGCTCGAAGATAAAGAAGCCAAGCTAAGAGAAAGTTG
CCAGGTGCTGGACAAGCAGCTGGGTAACCTTGACTTTCATAGCGTTAGCA
AGGAGAAAGTGAATCTAACTAAGCAAAGGGATAAGGCCACAGTGCGTAAG
GGCGAACTGCTGGGCCAGCTGGGCGAGATTCACAGCCAGGTGAACAAGTT
GCAGCGTGAAATCGACGAGCCCAGATTTAAGGAGTCTTTGAAAAACTTCC
GGAAGGCCAATTACGAGATAGAGGTGACACGCCTCTGCATTGAGGACTTG
GGCCAATATCGTTTAGCGTTGGAGTGGGCCCTTATCCAGTTTCACTCTGA
AAAAATGGAGATGATTAACCGTCTGATCCGCGAGTACTGGCGTAAGATAT
ATCGCGGAAATGACATTGACTATATTCAGGTGAAGACTGATGAGGTAAGC
TCGGATGCTTCGGCGGATCGGCGAAAGACATACAACTACAGAGTGGTCCA
GTCGAAGAACTACTCAGAGATCGAGATGCGGGGACGCTGTAGTGCTGGCC
AGCGCGTCCTTGCCTCCCTTATTATCCGCTTGGCACTGGCCGAGACCTTC
AGCAGTAATTGTGGTGTCCTAGCTCTGGATGAGCCCACCACGAACTTGGA
TCGCGCCAATATAAACTCGCTATGTGAAGCCCTGAATTGCATCGTGGAGG
AGCGCCAAAGCCAGTCCAACTTTATGCTCATCATCATCACTCACGACGAG
AATTTCGTTTCGTCTCTGGGCAAGATAACCTCCTACCATCGGGTCTTCCG
CAACGAGGAGTGCAAGTCGGTTATACGGAGAGTGGAGGCGGGTCCATCAA
AGAAAGCTTTGATAGATCAAGCAAGCTTTCTAGACCAT
BO30543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rad50-RD | 3957 | CG6339-PD | 1..3954 | 17..3970 | 19770 | 100 | Plus |
| rad50-RE | 3957 | CG6339-PE | 1..3954 | 17..3970 | 19740 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rad50-RD | 4068 | CG6339-RD | 83..4040 | 13..3970 | 19775 | 100 | Plus |
| rad50-RE | 4068 | CG6339-RE | 83..4040 | 13..3970 | 19745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22422064..22423245 | 871..2052 | 5910 | 100 | Plus |
| 2R | 25286936 | 2R | 22424491..22425454 | 3007..3970 | 4820 | 100 | Plus |
| 2R | 25286936 | 2R | 22421095..22421738 | 13..656 | 3205 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22423299..22423723 | 2050..2474 | 2125 | 100 | Plus |
| 2R | 25286936 | 2R | 22424009..22424271 | 2642..2904 | 1315 | 100 | Plus |
| 2R | 25286936 | 2R | 22421793..22422008 | 656..871 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 22423783..22423954 | 2472..2643 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 22424330..22424435 | 2903..3008 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:05:16 has no hits.
BO30543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:41 Download gff for
BO30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rad50-RD | 87..4040 | 17..3972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:40:57 Download gff for
BO30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rad50-RD | 87..4040 | 17..3972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:40:57 Download gff for
BO30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22424496..22425454 | 3012..3972 | 99 | | Plus |
| 2R | 22421099..22421738 | 17..656 | 100 | -> | Plus |
| 2R | 22421794..22422007 | 657..870 | 100 | -> | Plus |
| 2R | 22422064..22423242 | 871..2049 | 100 | -> | Plus |
| 2R | 22423299..22423722 | 2050..2473 | 100 | -> | Plus |
| 2R | 22423785..22423954 | 2474..2643 | 100 | -> | Plus |
| 2R | 22424011..22424271 | 2644..2904 | 100 | -> | Plus |
| 2R | 22424332..22424438 | 2905..3011 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:41 Download gff for
BO30543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18308604..18309243 | 17..656 | 100 | -> | Plus |
| arm_2R | 18309299..18309512 | 657..870 | 100 | -> | Plus |
| arm_2R | 18309569..18310747 | 871..2049 | 100 | -> | Plus |
| arm_2R | 18310804..18311227 | 2050..2473 | 100 | -> | Plus |
| arm_2R | 18311290..18311459 | 2474..2643 | 100 | -> | Plus |
| arm_2R | 18311516..18311776 | 2644..2904 | 100 | -> | Plus |
| arm_2R | 18311837..18311943 | 2905..3011 | 98 | -> | Plus |
| arm_2R | 18312001..18312959 | 3012..3972 | 99 | | Plus |
BO30543.pep Sequence
Translation from 16 to 3988
> BO30543.pep
MSSIESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLK
YALTGECPPGSDRGKSFVHDPKIFGLNEVLAQIKMQVRDRRGAQVSICRT
MKVSKKRNKMSFETMDSTINFLTGAGQSKREKQDSLSGRSVDIDVAISDF
MGVSKAIINNVLFCHQEDSSWPLDESKKLKEKFDAIFGITEYNKALDKII
KLRKEAMEELKIKEANIKHVAYLKQEMEVKTLNLQKAQRKCDAIKAQCSE
CEEEMKPIEARLVEIRNVEFEIGKYQAQKVEMDTKHKNCKDQISTLTLKI
KKPFRGTLDELDQEISNFDQRMLEMRQKRTEVEGDLSQIKRSSVAEQEKL
GTQDRKHCLAKQRHQSELACRAQLLKRVKEFCRELHIPIDCDLVEQPEKM
GEVLRDIEAMIITKHCEITEIVEQNEKADRSRQVKIDELRIELTKSEQSV
TAQEKQRESSKRESETLGVEIKKIETSMQDLKKLEKEINEVNELYESATK
NIDQQAIKDAIARKKASIAENQIQFKKLDEQLTFLGSMAKLVAECSLKQK
ELDKKNQEVHRVRSRHSDHFGKLFKEPITCNYRRSMQVVYEKLRREIQEL
NEKANTQKLKEQSYEIKRKNLISDISRMEKELKDSEELIYQKCRSTPYDD
LLERSKTTISKLQFDHGALKSSEALYKKYIQKMDEEPSCPLCHHNMTSDE
ACDLTSELTDEIQKLPDNITRAEKALKAEQIKYENLLQLKPTILKVKELK
DSLPQKKEELKKVEELLGDSVSEYETLIALIGEPTHNMELANSMMGDMSL
LDEALKDSARLTKDLDLQKGQLPASYDSSVSMDDLQAEKSKVSKELETER
KELESAQNAVQQQMDALNRLREKKNSLKDRQIHLREGLQSLPQLKERLEK
LNSFLTTVASEISELKAKIQPLKLNLRAAIEEKERLKKSESEKLAQLNSK
YNSYKSTDHDIQRLNKEAEDYAKLDLRNEIKKLDEIIMASKDKLRKLEAE
ISLKTDELETIKTECSNQQTVERDLKDNRELKQLEDKEAKLRESCQVLDK
QLGNLDFHSVSKEKVNLTKQRDKATVRKGELLGQLGEIHSQVNKLQREID
EPRFKESLKNFRKANYEIEVTRLCIEDLGQYRLALEWALIQFHSEKMEMI
NRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRRKTYNYRVVQSKNYS
EIEMRGRCSAGQRVLASLIIRLALAETFSSNCGVLALDEPTTNLDRANIN
SLCEALNCIVEERQSQSNFMLIIITHDENFVSSLGKITSYHRVFRNEECK
SVIRRVEAGPSKKALIDQASFLDH
BO30543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rad50-PD | 1318 | CG6339-PD | 1..1318 | 1..1318 | 6625 | 100 | Plus |
| rad50-PE | 1318 | CG6339-PE | 1..1318 | 1..1318 | 6615 | 99.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 420..1373 | 173..1136 | 304 | 18.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 423..1376 | 173..1136 | 304 | 18.6 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 445..1398 | 173..1136 | 304 | 18.6 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 701..1506 | 181..923 | 223 | 20.6 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 704..1509 | 181..923 | 223 | 20.6 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 220..1010 | 425..1147 | 198 | 21.7 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 397..1013 | 593..1147 | 188 | 22.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 767..1509 | 76..892 | 174 | 16.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 770..1512 | 76..892 | 174 | 16.9 | Plus |
