BO30546.complete Sequence
1441 bp assembled on 2011-11-09
GenBank Submission: KX795155
> BO30546.complete
GAAGTTATCAGTCGACATGAAGGGTTTTAACGACTTCAAGCGAATTGCGG
TCGTTTGCATACCCAGCGAAGATGAATTGAAACGTCGCATCGCCGAAAAA
GAGGAAAAGGGAAATGCTTTTACAGTTAAAGAATCAACAATTAATAATTT
ACGAGCCAACTTCACACTTCCCTCGCTGGAGTTTGGCTGGTTCGATGATA
TAAACTACACGGAGCTGACTGGTGACGAGGCCAAGAGCGAGGTCAAGAAG
TACAACGAGAAGGGCAAAAAGGCCATTGACGCGGAGAGGTCGCGTGACAA
GAGATCCCGAGGAAGTCGCGACAACTATCGTCGTGATGACCGGAACCGGA
ATCGATACAATGATGACCGACGTCGTGATTATGGCGGCCAGCGGCACGAA
AGTCGTTGGAGCGACTCCCGCAGGGGAGGCGGCGGTGGCGGTTACTCCAG
CAATAGTGGTGGAGGCGGCAGTCGTGGCTACGACAATCGCCGCAACTACA
ACAGCGGTAGCGGTGGCCAGCAAAATTGGGTGCAGAACAGCCGCAGAAGC
GGGTACGATGATCGCGGCTATGGTGGCGGTGGAAGCGGCAGTCGTGGATA
CGACAATCGCAACCGTGGATACGCAGGCGGCAGCGGTGGTGGTGGCGGCG
GCGGCGGTGGTGGTGGTGGTGGTGGTGGTCAGCAAAACTGGATGCAGAAC
AACCGCAGAAGTGGGTATGACGACCGCGGCTACGGCAGCTCGCGGGACTA
TCGCGATCGAGACCGTGGCAACGACCGCAGTCGAATGGGCAGTAACGACC
GGAACCGGGGCAGCAGCCAGAGTAGCTATCGCTCGGGAGGTGGTACTCAT
CAACAACGGGATTTTCGGCCTGGCCACCGCGACACCAAAGAAGATAGTCG
CGGTGGCTATGAGCGGTCAGCTGGTCAATCGCTACCCAAGTATGGCAATA
ACACCGCTGTAGGCGGTGGCTACGATCAGTACAAGCAACAAGGTGGAGCA
CCTGGCGGAGGCAAGGCCTCCCTTAGCGGCAAGTGGAGTACGTACAGTCA
ACACCATCAGCAACAGCAGGCGCCGCAGCATCAACAAACGGGCATCTGGC
AGACTCAGCAGCAGTCACAACAATACCAACAACCTCAGCAAGCAGCGGCG
GGCCAGCAACAATACTGGGCCTATAACCAAATGCAGACAGGTTATGGCAA
CCAACAGGCCTGGCAGAGTGCCGATCCGCAGCAGCAACAACAGTGGATGT
CCTGGTGGCAGCAGCAGCAGCAGGGCTCTGGCGGAGCAGCGGCTGGGAAT
GCCAGTGGCGGATCAGGCGTAAATGTCGGCGGCGGCGCTGGCAATAATGA
TGGCGGTGCCGCCAATCATTACTGGTCTCAATATTCGTACTCCACGCAGT
CCAATGCGGGTGCCGACAAGAAGGCAAGCTTTCTAGACCAT
BO30546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RC | 3819 | CG30122-PC | 2410..3816 | 17..1423 | 7035 | 100 | Plus |
| CG30122-RD | 3816 | CG30122-PD | 2410..3813 | 17..1423 | 6955 | 99.8 | Plus |
| CG30122-RB | 3816 | CG30122-PB | 2410..3813 | 17..1423 | 6955 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-RC | 4623 | CG30122-RC | 2720..4126 | 17..1423 | 7035 | 100 | Plus |
| CG30122-RD | 4620 | CG30122-RD | 2720..4123 | 17..1423 | 6955 | 99.8 | Plus |
| CG30122-RB | 4620 | CG30122-RB | 2720..4123 | 17..1423 | 6955 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18633425..18634287 | 1016..154 | 4315 | 100 | Minus |
| 2R | 25286936 | 2R | 18633192..18633365 | 1187..1014 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 18632825..18632989 | 1423..1259 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 18634770..18634908 | 155..17 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 18633054..18633127 | 1261..1188 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6938 | 1051..1282 | 239 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2510 | 1049..1243 | 216 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6861 | 1025..1161 | 204 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6890 | 1025..1149 | 188 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6888 | 1025..1161 | 183 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2495 | 1049..1182 | 153 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2865 | 762..1309 | 152 | 54.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1163 | 1016..1133 | 152 | 63.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..218 | 1229..1290 | 144 | 71.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9248 | 1229..1290 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6877 | 1107..1273 | 136 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1158 | 1025..1086 | 135 | 70.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1178 | 1049..1125 | 119 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 1049..1089 | 115 | 75.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2033..2105 | 1205..1274 | 115 | 66.2 | Plus |
BO30546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-09 10:40:38 Download gff for
BO30546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RE | 51..1457 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:54 Download gff for
BO30546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RC | 2720..4126 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:35 Download gff for
BO30546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30122-RC | 2720..4126 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:35 Download gff for
BO30546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18633054..18633127 | 1188..1261 | 100 | <- | Minus |
| 2R | 18633192..18633363 | 1016..1187 | 100 | <- | Minus |
| 2R | 18632823..18632986 | 1262..1425 | 98 | <- | Minus |
| 2R | 18633426..18634285 | 156..1015 | 100 | <- | Minus |
| 2R | 18634770..18634908 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:54 Download gff for
BO30546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14520328..14520491 | 1262..1425 | 98 | <- | Minus |
| arm_2R | 14520559..14520632 | 1188..1261 | 100 | <- | Minus |
| arm_2R | 14520697..14520868 | 1016..1187 | 100 | <- | Minus |
| arm_2R | 14520931..14521790 | 156..1015 | 100 | <- | Minus |
| arm_2R | 14522275..14522413 | 17..155 | 100 | | Minus |
BO30546.pep Sequence
Translation from 16 to 1441
> BO30546.pep
MKGFNDFKRIAVVCIPSEDELKRRIAEKEEKGNAFTVKESTINNLRANFT
LPSLEFGWFDDINYTELTGDEAKSEVKKYNEKGKKAIDAERSRDKRSRGS
RDNYRRDDRNRNRYNDDRRRDYGGQRHESRWSDSRRGGGGGGYSSNSGGG
GSRGYDNRRNYNSGSGGQQNWVQNSRRSGYDDRGYGGGGSGSRGYDNRNR
GYAGGSGGGGGGGGGGGGGGGQQNWMQNNRRSGYDDRGYGSSRDYRDRDR
GNDRSRMGSNDRNRGSSQSSYRSGGGTHQQRDFRPGHRDTKEDSRGGYER
SAGQSLPKYGNNTAVGGGYDQYKQQGGAPGGGKASLSGKWSTYSQHHQQQ
QAPQHQQTGIWQTQQQSQQYQQPQQAAAGQQQYWAYNQMQTGYGNQQAWQ
SADPQQQQQWMSWWQQQQQGSGGAAAGNASGGSGVNVGGGAGNNDGGAAN
HYWSQYSYSTQSNAGADKKASFLDH
BO30546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30122-PC | 1272 | CG30122-PC | 804..1272 | 1..469 | 2579 | 100 | Plus |
| CG30122-PD | 1271 | CG30122-PD | 804..1271 | 1..469 | 2562 | 99.8 | Plus |
| CG30122-PB | 1271 | CG30122-PB | 804..1271 | 1..469 | 2557 | 99.6 | Plus |
| Hrb87F-PE | 385 | CG12749-PE | 163..381 | 59..275 | 194 | 28.9 | Plus |
| CG5172-PD | 172 | CG5172-PD | 26..154 | 137..276 | 193 | 35.7 | Plus |
| CG5172-PD | 172 | CG5172-PD | 62..168 | 122..224 | 178 | 41.5 | Plus |
